Browse Element(s) Details


Os.15072.1.S1_at

Description gb:AK067837.1
DB_XREF= gi:32977855
TID=Os.15072.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15072 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013124E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013124E10, full insert sequence.
FL= gb:AK067837.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0671011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06680Os.1814.3.A1_at11/115+3441606..3446708expressed protein
LOC_Os05g06690Os.52169.1.S1_at11/115+3450334..3463103HECT-domain-containing protein, putative, expressed
LOC_Os05g06700Os.6413.1.S1_a_at11/115+3467185..3470310FAM18-like protein At1g09330, putative, expressed
LOC_Os05g06710Os.15072.1.S1_at11/115+3470699..3474778GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g06720Os.8555.1.S1_at11/115+3477116..3478845GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g06730OsAffx.4264.1.S1_at11/115+3490294..3490563hypothetical protein
LOC_Os05g06740OsAffx.26763.1.S1_at11/115+3493623..3496463hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15072.1.S1_at--1020--211Chr05:3471245..3471269 (25 bp)
ATTTGGCTGCGATGATCTCTGCGAG
LOC_Os05g06710
Os.15072.1.S1_at--688--6291Chr05:3471235..3471259 (25 bp)
GATGATCTCTGCGAGCCAGGATCAA
LOC_Os05g06710
Os.15072.1.S1_at--401--4731Chr05:3471201..3471225 (25 bp)
GCTGGGATGGTGTGCACTTCACTGA
LOC_Os05g06710
Os.15072.1.S1_at--916--8451Chr05:3471167..3471191 (25 bp)
TGGCCTCGCGGCTAAGCTCGCGATG
LOC_Os05g06710
Os.15072.1.S1_at--1004--4791Chr05:3471152..3471176 (25 bp)
GCTCGCGATGAGTGGTGAGTACTCC
LOC_Os05g06710
Os.15072.1.S1_at--423--8231Chr05:3471110..3471134 (25 bp)
GGCAAGCTTGGTCAATGCTGGCTCC
LOC_Os05g06710
Os.15072.1.S1_at--348--2271Chr05:3471082..3471106 (25 bp)
AAATCATCCGATTCTTGATGCCAAG
LOC_Os05g06710
Os.15072.1.S1_at--19--671Chr05:3471007..3471031 (25 bp)
ATGAATCGATTCACATTATGATGGT
LOC_Os05g06710
Os.15072.1.S1_at--193--8831Chr05:3470934..3470958 (25 bp)
TGATTAGCTCCTTTGTTGATAAAAA
LOC_Os05g06710
Os.15072.1.S1_at--979--9911Chr05:3470811..3470835 (25 bp)
TACTGTTGATGTACGTGTATAGACA
LOC_Os05g06710
Os.15072.1.S1_at--1060--9011Chr05:3470773..3470797 (25 bp)
TGCAAGCTTCCAGACCTCAAGAAAA
LOC_Os05g06710
Target Sequence 
ATTTGGCTGCGATGATCTCTGCGAGCCAGGATCAAAGGTGCTAAGCTGGGATGGTGTGCACTTCACTGATTTTGNCAGTG
GCCTCGCGGCTAAGCTCGCGATGAGTGGTGAGTACTCCNAGCCCANAAGTGAAGCTGGCAAGCTTGGTCAATGCTGGCTC
CNATAAATCATCCGATTCTTGATGCCAAGAAACGAATAAATATCATCTGGATGAATCATGGATCCANTGGATGGATGATG
ATGAATCGATTCACATTATGATGGTGAGTAATGTGGATTGATGGGTATGTCCCNACAGAATTGGTTCTTACANTTGATTA
GCTCCTTTGTTGATAAAAAAAGGCNAAGTAACNATGGAGAGGCTCCTTCAGCTACNAAGTAGAGAAGTTCATGGNTTTTN
TTTTTTTCTGAACTTTTGTGTTGAGTACAAAGATTTTGTACTGTTGATGTACGTGTATAGACAATTTTATGGAAGCTGCA
AGCTTCCAGACCTCAAGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15072.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis