Browse Element(s) Details


Os.6413.1.S1_a_at

Description gb:AK103137.1
DB_XREF= gi:32988346
TID=Os.6413.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6413 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033120E14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033120E14, full insert sequence.
FL= gb:AK103137.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0670011/11FAM18-like protein At1g09330, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06670Os.1814.1.S1_a_at11/115+3437635..3443885oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g06680Os.1814.3.A1_at11/115+3441606..3446708expressed protein
LOC_Os05g06690Os.52169.1.S1_at11/115+3450334..3463103HECT-domain-containing protein, putative, expressed
LOC_Os05g06700Os.6413.1.S1_a_at11/115+3467185..3470310FAM18-like protein At1g09330, putative, expressed
LOC_Os05g06710Os.15072.1.S1_at11/115+3470699..3474778GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g06720Os.8555.1.S1_at11/115+3477116..3478845GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g06730OsAffx.4264.1.S1_at11/115+3490294..3490563hypothetical protein
LOC_Os05g06740OsAffx.26763.1.S1_at11/115+3493623..3496463hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6413.1.S1_a_at--1055--3411Chr05:3469249..3469273 (25 bp)
CAGACTTGAAGCTGACTACCTTCTT
LOC_Os05g06700
Os.6413.1.S1_a_at--702--6851Chr05:3469283..3469307 (25 bp)
GTTTGCTTGACTCTAAGCCTTGCAA
LOC_Os05g06700
Os.6413.1.S1_a_at--98--2511Chr05:3469307..3469331 (25 bp)
AACATTGTTGGGTTCACCAGATGCA
LOC_Os05g06700
Os.6413.1.S1_a_at--1049--2271Chr05:3469934..3469958 (25 bp)
AAATCCGAGCTCCAAACAGCAAGGC
LOC_Os05g06700
Os.6413.1.S1_a_at--873--3371Chr05:3469950..3469974 (25 bp)
CAGCAAGGCCCTTTTCGAATACAAC
LOC_Os05g06700
Os.6413.1.S1_a_at--680--7331Chr05:3470002..3470026 (25 bp)
GTGCATTATCCCATTTCCATACATT
LOC_Os05g06700
Os.6413.1.S1_a_at--69--6791Chr05:3470085..3470109 (25 bp)
GTTAGTACTACTGCCTTCCAAAGGA
LOC_Os05g06700
Os.6413.1.S1_a_at--1019--10111Chr05:3470136..3470160 (25 bp)
TATGTCTTGAGTCTGAGTGTACCCT
LOC_Os05g06700
Os.6413.1.S1_a_at--995--5431Chr05:3470179..3470203 (25 bp)
GAACCTGTCTTCCAATGCAGCTTCT
LOC_Os05g06700
Os.6413.1.S1_a_at--23--9051Chr05:3470194..3470218 (25 bp)
TGCAGCTTCTTGTTAATTCCATATA
LOC_Os05g06700
Os.6413.1.S1_a_at--738--9751Chr05:3470223..3470247 (25 bp)
TAATCATTTGCTGTGCTGTATCTTA
LOC_Os05g06700
Target Sequence 
CAGACTTGAAGCTGACTACCTTCTTGTTGTTGGAGTTTGCTTGACTCTAAGCCTTGCAAACATTGTTGGGTTCACCAGAT
GCAACAAAGATGCCAAGAAGAATATCCGGGGTTACTTTGAAGGTCATGCTCAAAATGCGATCACATCCCGCATCACATCC
ACCCTGCAATCAGCATTTGGAGTAATCTAAAATCCGAGCTCCAAACAGCAAGGCCCTTTTCGAATACAACCNATGTAAAA
TCTGTCAAAAGGATTAGCGTGCATTATCCCATTTCCATACATTTTTGTTNGACCCAATACACCCAGTAGGTTGATTTTGA
TTGGAAAGACAGAGAACACCTTGTTAGTACTACTGCCTTCCAAAGGAGTAAAAAAGAAGTTTTTAGCCGAGAATATGTCT
TGAGTCTGAGTGTACCCTTTAGGGATTTTGACCNTGGAACCTGTCTTCCAATGCAGCTTCTTGTTAATTCCATATATTAT
TAATCATTTGCTGTGCTGTATCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6413.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis