Browse Element(s) Details


Os.33000.1.S2_at

Description gb:AK071771.1
DB_XREF= gi:32981794
TID=Os.33000.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33000 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0537A05.22 (P0537A05.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023108N02, full insert sequence.
FL= gb:AK102126.1 gb:AK071771.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2248010/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22430Os.27350.1.A1_at6/111+12597767..12599726F-box domain containing protein
LOC_Os01g22440OsAffx.11157.1.S1_at3/111+12603727..12604185hypothetical protein
LOC_Os01g22450OsAffx.11158.1.S1_at8/111+12610507..12612419hypothetical protein
LOC_Os01g22450Os.45671.1.S1_x_at5/111+12610507..12612419hypothetical protein
LOC_Os01g22450Os.45671.1.S1_at4/111+12610507..12612419hypothetical protein
LOC_Os01g22480Os.33000.1.S1_x_at11/111+12618924..12623156F-box domain containing protein, expressed
LOC_Os01g22480Os.33000.1.S2_at10/111+12618924..12623156F-box domain containing protein, expressed
LOC_Os01g22490Os.28209.2.S1_at11/111+12628070..12628889ubiquitin, putative, expressed
LOC_Os01g22500Os.1574.1.S1_at11/111+12629067..12632493Bucentaur or craniofacial development family protein, expressed
LOC_Os01g22510OsAffx.1782.2.S1_at11/111+12633021..12636871Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g22510Os.1505.1.S1_x_at9/111+12633021..12636871Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g22520Os.1506.1.S1_at10/111+12637348..12640956Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g22520OsAffx.26764.1.S1_x_at1/111+12637348..12640956Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g22530OsAffx.23340.1.S1_at11/111+12643396..12643882hypothetical protein
LOC_Os01g22530OsAffx.23340.1.S1_x_at11/111+12643396..12643882hypothetical protein
LOC_Os01g22540OsAffx.23341.2.S1_at11/111+12647201..12647921hypothetical protein
LOC_Os01g22540OsAffx.23341.1.S1_s_at11/111+12647201..12647921hypothetical protein
LOC_Os01g22540OsAffx.23341.1.S1_at4/111+12647201..12647921hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33000.1.S2_at--46--9151Chr01:12619378..12619402 (25 bp)
TGCGAGGTCTCCATGATTCACTGAA
LOC_Os01g22480
Os.33000.1.S2_at--1106--10371Chr01:12619346..12619370 (25 bp)
TTTTCACCTATAATCCCCTGCTATA
LOC_Os01g22480
Os.33000.1.S2_at--516--151Chr01:12619311..12619335 (25 bp)
ATTATCCGTCTAAGGTGGCATCTCT
LOC_Os01g22480
Os.33000.1.S2_at--502--1631Chr01:12619205..12619229 (25 bp)
ACCGTGACCTTTGTTTATACATCCA
LOC_Os01g22480
Os.33000.1.S2_at--791--10331Chr01:12619124..12619148 (25 bp)
TTTAAACTTGTTTCCGCAGCATCAC
LOC_Os01g22480
Os.33000.1.S2_at--1120--5051Chr01:12619109..12619133 (25 bp)
GCAGCATCACATTCAGTTTCTCAAA
LOC_Os01g22480
Os.33000.1.S2_at--337--7111Chr01:12619080..12619104 (25 bp)
GTCAGACTCATGGTGATGCCTTTTG
LOC_Os01g22480
Os.33000.1.S2_at--443--31Chr01:12619055..12619079 (25 bp)
ATTGGTTTTCAGGTCATCTTTCTAG
LOC_Os01g22480
Os.33000.1.S2_at--633--8571Chr01:12618991..12619015 (25 bp)
TGGATATCTGTACGGTCTTGCTCTA
LOC_Os01g22480
Os.33000.1.S2_at--1106--10251Chr01:12618960..12618984 (25 bp)
TTTGTAAACAGTGGCGCGCTACCTT
LOC_Os01g22480
Os.33000.1.S2_at--858--4571NONE
GCGCTACCTTGTGTTATCGTCATGT
NONE
Target Sequence 
TGCGAGGTCTCCATGATTCACTGAATTTGTGGTTTTCACCTATAATCCCCTGCTATATGAATATGTTATTATCCGTCTAA
GGTGGCATCTCTAAAATTAATATATACCTCCCAACTATTTATTTGATTGTTACAAAGATTATGCAAAATGGAGACACAGA
ACTTTTTATTTAAACCGTGACCTTTGTTTATACATCCACTTAGATCCATTAACATTGTAGTATTTCCATAGTGTTCTAGA
CCAATCTTTTGATTTTTAAACTTGTTTCCGCAGCATCACATTCAGTTTCTCAAATAAAGTCAGACTCATGGTGATGCCTT
TTGATTGGTTTTCAGGTCATCTTTCTAGTAATTCTGGAGATTGAGTCATGAATACATTAATTTAGCGTGGATATCTGTAC
GGTCTTGCTCTAGAATAATTTGTAAACAGTGGCGCGCTACCTTGTGTTATCGTCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33000.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis