Browse Element(s) Details


OsAffx.23340.1.S1_x_at

Description tigr:9629.m02164
TID=OsAffx.23340.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2253011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22480Os.33000.1.S1_x_at11/111+12618924..12623156F-box domain containing protein, expressed
LOC_Os01g22480Os.33000.1.S2_at10/111+12618924..12623156F-box domain containing protein, expressed
LOC_Os01g22490Os.28209.2.S1_at11/111+12628070..12628889ubiquitin, putative, expressed
LOC_Os01g22500Os.1574.1.S1_at11/111+12629067..12632493Bucentaur or craniofacial development family protein, expressed
LOC_Os01g22510OsAffx.1782.2.S1_at11/111+12633021..12636871Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g22510Os.1505.1.S1_x_at9/111+12633021..12636871Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g22520Os.1506.1.S1_at10/111+12637348..12640956Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g22520OsAffx.26764.1.S1_x_at1/111+12637348..12640956Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g22530OsAffx.23340.1.S1_at11/111+12643396..12643882hypothetical protein
LOC_Os01g22530OsAffx.23340.1.S1_x_at11/111+12643396..12643882hypothetical protein
LOC_Os01g22540OsAffx.23341.2.S1_at11/111+12647201..12647921hypothetical protein
LOC_Os01g22540OsAffx.23341.1.S1_s_at11/111+12647201..12647921hypothetical protein
LOC_Os01g22540OsAffx.23341.1.S1_at4/111+12647201..12647921hypothetical protein
LOC_Os01g22550Os.53990.1.S1_at11/111+12649850..12655220Galactosyltransferase family protein, expressed
LOC_Os01g22560Os.11128.1.S1_at2/111+12659818..12660612Acyltransferase family protein, expressed
LOC_Os01g22570NANA1+12664814..12665909Glycerol-3-phosphate acyltransferase 1, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23340.1.S1_x_at--154--9231Chr01:12643439..12643463 (25 bp)
TCCAGCTCCCCGCACAAATTGAGAT
LOC_Os01g22530
OsAffx.23340.1.S1_x_at--643--3391Chr01:12643441..12643465 (25 bp)
CAGCTCCCCGCACAAATTGAGATGG
LOC_Os01g22530
OsAffx.23340.1.S1_x_at--1054--1572Chr04:27948986..27949013 (23 bp)
AGCTCCCCGCACAAATTGAGATGGT
NONE
OsAffx.23340.1.S1_x_at--925--4792Chr04:27948986..27949013 (23 bp)
GCTCCCCGCACAAATTGAGATGGTA
NONE
OsAffx.23340.1.S1_x_at--404--9311Chr01:12643445..12643469 (25 bp)
TCCCCGCACAAATTGAGATGGTATA
LOC_Os01g22530
OsAffx.23340.1.S1_x_at--407--1311Chr01:12643460..12643484 (25 bp)
AGATGGTATATATCCCCGGCGAGTT
LOC_Os01g22530
OsAffx.23340.1.S1_x_at--812--6231Chr01:12643461..12643485 (25 bp)
GATGGTATATATCCCCGGCGAGTTC
LOC_Os01g22530
OsAffx.23340.1.S1_x_at--112--6071Chr01:12643480..12643504 (25 bp)
GAGTTCCACGACCTCGCCGTGGTAT
LOC_Os01g22530
OsAffx.23340.1.S1_x_at--908--1831Chr01:12643487..12643511 (25 bp)
ACGACCTCGCCGTGGTATATATCCC
LOC_Os01g22530
OsAffx.23340.1.S1_x_at--826--3991Chr01:12643497..12643521 (25 bp)
CGTGGTATATATCCCCGGCGAGTTC
LOC_Os01g22530
OsAffx.23340.1.S1_x_at--919--10191Chr01:12643466..12643490 (25 bp)
TATATATCCCCGGCGAGTTCCACGA
LOC_Os01g22530
Target Sequence 
TCCAGCTCCCCGCACAAATTGAGATGGTATATATCCCCGGCGAGTTCCACGACCTCGCCGTGGTATATATCCCCGGCGAG
TTCCACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23340.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis