Browse Element(s) Details


OsAffx.23341.2.S1_at

Description tigr:9629.m02165
TID=OsAffx.23341.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2254011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22480Os.33000.1.S1_x_at11/111+12618924..12623156F-box domain containing protein, expressed
LOC_Os01g22480Os.33000.1.S2_at10/111+12618924..12623156F-box domain containing protein, expressed
LOC_Os01g22490Os.28209.2.S1_at11/111+12628070..12628889ubiquitin, putative, expressed
LOC_Os01g22500Os.1574.1.S1_at11/111+12629067..12632493Bucentaur or craniofacial development family protein, expressed
LOC_Os01g22510OsAffx.1782.2.S1_at11/111+12633021..12636871Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g22510Os.1505.1.S1_x_at9/111+12633021..12636871Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g22520Os.1506.1.S1_at10/111+12637348..12640956Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g22520OsAffx.26764.1.S1_x_at1/111+12637348..12640956Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g22530OsAffx.23340.1.S1_at11/111+12643396..12643882hypothetical protein
LOC_Os01g22530OsAffx.23340.1.S1_x_at11/111+12643396..12643882hypothetical protein
LOC_Os01g22540OsAffx.23341.2.S1_at11/111+12647201..12647921hypothetical protein
LOC_Os01g22540OsAffx.23341.1.S1_s_at11/111+12647201..12647921hypothetical protein
LOC_Os01g22540OsAffx.23341.1.S1_at4/111+12647201..12647921hypothetical protein
LOC_Os01g22550Os.53990.1.S1_at11/111+12649850..12655220Galactosyltransferase family protein, expressed
LOC_Os01g22560Os.11128.1.S1_at2/111+12659818..12660612Acyltransferase family protein, expressed
LOC_Os01g22570NANA1+12664814..12665909Glycerol-3-phosphate acyltransferase 1, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23341.2.S1_at--411--9091Chr01:12647680..12647703 (24 bp)
TGCTCTACGCCGTTCGCAGCTGCGT
LOC_Os01g22540
OsAffx.23341.2.S1_at--742--10631Chr01:12647642..12647691 (25 bp)
TTCGCAGCTGCGTGGCTCGGCTGCT
LOC_Os01g22540
OsAffx.23341.2.S1_at--158--71Chr01:12647305..12647329 (25 bp)
ATTGCAAAGGCGGTCAGGGTGTACA
LOC_Os01g22540
OsAffx.23341.2.S1_at--621--5111Chr01:12647302..12647326 (25 bp)
GCAAAGGCGGTCAGGGTGTACAACT
LOC_Os01g22540
OsAffx.23341.2.S1_at--1035--871Chr01:12647298..12647322 (25 bp)
AGGCGGTCAGGGTGTACAACTTACA
LOC_Os01g22540
OsAffx.23341.2.S1_at--1145--7111Chr01:12647293..12647317 (25 bp)
GTCAGGGTGTACAACTTACAAGATG
LOC_Os01g22540
OsAffx.23341.2.S1_at--94--10491Chr01:12647278..12647302 (25 bp)
TTACAAGATGATACTTTCGCTGATC
LOC_Os01g22540
OsAffx.23341.2.S1_at--1062--6471Chr01:12647269..12647293 (25 bp)
GATACTTTCGCTGATCAGTACACTC
LOC_Os01g22540
OsAffx.23341.2.S1_at--845--10291Chr01:12647264..12647288 (25 bp)
TTTCGCTGATCAGTACACTCAGAGT
LOC_Os01g22540
OsAffx.23341.2.S1_at--1072--6431Chr01:12647257..12647281 (25 bp)
GATCAGTACACTCAGAGTTCCTGGA
LOC_Os01g22540
OsAffx.23341.2.S1_at--8--9651Chr01:12647246..12647270 (25 bp)
TCAGAGTTCCTGGAAGAACTGCCCC
LOC_Os01g22540
Target Sequence 
TGCTCTACGCCGTTCGCAGCTGCGTGGCTCGGCTGCTCCAGTGGTCAACTGCATTTGTGTCCCTCTGAAACATTCCTTCG
ACCGCGCCAGCTATATTGTTCGGGCACCATGGGGTGACATCCTCCAGGTGTGGAGGAGCTTTGAGCTCGACGATGGCGAG
GAGCCCCGCACATATGAACTCGCGGTGTTCAAGCTTGATCTTGCTACGGAGGATCTAGTGCAGATAAAGGATCTGCGTGG
CCACGCTCTGTTTGTTAGCTTCTTCGTTTCTGTGAATGAATTCCCCGTGTTAACTCCGAATTGCGTCTACCTTGCTCATG
ATAGCACCAAGTGTAGGAGATTTAAGCATATTGCAAAGGCGGTCAGGGTGTACAACTTACAAGATGATACTTTCGCTGAT
CAGTACACTCAGAGTTCCTGGAAGAACTGCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23341.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis