Browse Element(s) Details


OsAffx.23341.1.S1_s_at

Description gb:NM_183839.1
DB_XREF= gi:34894805
GEN=P0554D10.6
TID=OsAffx.23341.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0554D10.6 (P0554D10.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2254011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22480Os.33000.1.S1_x_at11/111+12618924..12623156F-box domain containing protein, expressed
LOC_Os01g22480Os.33000.1.S2_at10/111+12618924..12623156F-box domain containing protein, expressed
LOC_Os01g22490Os.28209.2.S1_at11/111+12628070..12628889ubiquitin, putative, expressed
LOC_Os01g22500Os.1574.1.S1_at11/111+12629067..12632493Bucentaur or craniofacial development family protein, expressed
LOC_Os01g22510OsAffx.1782.2.S1_at11/111+12633021..12636871Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g22510Os.1505.1.S1_x_at9/111+12633021..12636871Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g22520Os.1506.1.S1_at10/111+12637348..12640956Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g22520OsAffx.26764.1.S1_x_at1/111+12637348..12640956Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g22530OsAffx.23340.1.S1_at11/111+12643396..12643882hypothetical protein
LOC_Os01g22530OsAffx.23340.1.S1_x_at11/111+12643396..12643882hypothetical protein
LOC_Os01g22540OsAffx.23341.2.S1_at11/111+12647201..12647921hypothetical protein
LOC_Os01g22540OsAffx.23341.1.S1_s_at11/111+12647201..12647921hypothetical protein
LOC_Os01g22540OsAffx.23341.1.S1_at4/111+12647201..12647921hypothetical protein
LOC_Os01g22550Os.53990.1.S1_at11/111+12649850..12655220Galactosyltransferase family protein, expressed
LOC_Os01g22560Os.11128.1.S1_at2/111+12659818..12660612Acyltransferase family protein, expressed
LOC_Os01g22570NANA1+12664814..12665909Glycerol-3-phosphate acyltransferase 1, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23341.1.S1_s_at--665--1091Chr01:12647615..12647639 (25 bp)
AGTGGTCAACTGCATTTGTGTCCCT
LOC_Os01g22540
OsAffx.23341.1.S1_s_at--21--10251Chr01:12647601..12647625 (25 bp)
TTTGTGTCCCTCTGAAACATTCCTT
LOC_Os01g22540
OsAffx.23341.1.S1_s_at--558--3391Chr01:12647567..12647591 (25 bp)
CAGCTATATTGTTCGGGCACCATGG
LOC_Os01g22540
OsAffx.23341.1.S1_s_at--639--6171Chr01:12647497..12647521 (25 bp)
GAGGAGCCCCGCACATATGAACTCG
LOC_Os01g22540
OsAffx.23341.1.S1_s_at--139--2551Chr01:12647478..12647502 (25 bp)
AACTCGCGGTGTTCAAGCTTGATCT
LOC_Os01g22540
OsAffx.23341.1.S1_s_at--295--431Chr01:12647457..12647481 (25 bp)
ATCTTGCTACGGAGGATCTAGTGCA
LOC_Os01g22540
OsAffx.23341.1.S1_s_at--269--1271Chr01:12647433..12647457 (25 bp)
AGATAAAGGATCTGCGTGGCCACGC
LOC_Os01g22540
OsAffx.23341.1.S1_s_at--609--7551Chr01:12647418..12647442 (25 bp)
GTGGCCACGCTCTGTTTGTTAGCTT
LOC_Os01g22540
OsAffx.23341.1.S1_s_at--144--10271Chr01:12647404..12647428 (25 bp)
TTTGTTAGCTTCTTCGTTTCTGTGA
LOC_Os01g22540
OsAffx.23341.1.S1_s_at--77--9011Chr01:12647378..12647402 (25 bp)
TGAATTCCCCGTGTTAACTCCGAAT
LOC_Os01g22540
OsAffx.23341.1.S1_s_at--20--3171Chr01:12647356..12647380 (25 bp)
AATTGCGTCTACCTTGCTCATGATA
LOC_Os01g22540
Target Sequence 
AGTGGTCAACTGCATTTGTGTCCCTCTGAAACATTCCTTCGACCGCGCCAGCTATATTGTTCGGGCACCATGGGGTGACA
TCCTCCAGGTGTGGAGGAGCTTTGAGCTCGACGATGGCGAGGAGCCCCGCACATATGAACTCGCGGTGTTCAAGCTTGAT
CTTGCTACGGAGGATCTAGTGCAGATAAAGGATCTGCGTGGCCACGCTCTGTTTGTTAGCTTCTTCGTTTCTGTGAATGA
ATTCCCCGTGTTAACTCCGAATTGCGTCTACCTTGCTCATGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23341.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis