Browse Element(s) Details


Os.53990.1.S1_at

Description gb:AK101169.1
DB_XREF= gi:32986378
TID=Os.53990.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53990 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033028K02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033028K02, full insert sequence.
FL= gb:AK101169.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2255011/11Galactosyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22490Os.28209.2.S1_at11/111+12628070..12628889ubiquitin, putative, expressed
LOC_Os01g22500Os.1574.1.S1_at11/111+12629067..12632493Bucentaur or craniofacial development family protein, expressed
LOC_Os01g22510OsAffx.1782.2.S1_at11/111+12633021..12636871Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g22510Os.1505.1.S1_x_at9/111+12633021..12636871Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g22520Os.1506.1.S1_at10/111+12637348..12640956Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g22520OsAffx.26764.1.S1_x_at1/111+12637348..12640956Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g22530OsAffx.23340.1.S1_at11/111+12643396..12643882hypothetical protein
LOC_Os01g22530OsAffx.23340.1.S1_x_at11/111+12643396..12643882hypothetical protein
LOC_Os01g22540OsAffx.23341.2.S1_at11/111+12647201..12647921hypothetical protein
LOC_Os01g22540OsAffx.23341.1.S1_s_at11/111+12647201..12647921hypothetical protein
LOC_Os01g22540OsAffx.23341.1.S1_at4/111+12647201..12647921hypothetical protein
LOC_Os01g22550Os.53990.1.S1_at11/111+12649850..12655220Galactosyltransferase family protein, expressed
LOC_Os01g22560Os.11128.1.S1_at2/111+12659818..12660612Acyltransferase family protein, expressed
LOC_Os01g22570NANA1+12664814..12665909Glycerol-3-phosphate acyltransferase 1, putative

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53990.1.S1_at--202--8431Chr01:12650478..12650502 (25 bp)
GGCCTGTTGAAGCATATCCACCATG
LOC_Os01g22550
Os.53990.1.S1_at--639--3491Chr01:12650449..12650473 (25 bp)
CATGGCCCTGGATATATAGTCTCAA
LOC_Os01g22550
Os.53990.1.S1_at--703--3291Chr01:12650415..12650439 (25 bp)
CAAAGTTTATTGTTCATGGTCATCA
LOC_Os01g22550
Os.53990.1.S1_at--226--8691Chr01:12650195..12650219 (25 bp)
TGTGAATGATGACCGCTTCTATAGC
LOC_Os01g22550
Os.53990.1.S1_at--1030--771Chr01:12650165..12650189 (25 bp)
ATGTGACTCCGATTATGTGCTTGCC
LOC_Os01g22550
Os.53990.1.S1_at--1021--10111Chr01:12650152..12650176 (25 bp)
TATGTGCTTGCCCACTATCAGAGCC
LOC_Os01g22550
Os.53990.1.S1_at--953--5871Chr01:12650132..12650156 (25 bp)
GAGCCCGAGGCTTATGATGTGTTTG
LOC_Os01g22550
Os.53990.1.S1_at--63--6091Chr01:12650089..12650113 (25 bp)
GAGTATCAGCCGGTATGTTGTGAAT
LOC_Os01g22550
Os.53990.1.S1_at--803--871Chr01:12650009..12650033 (25 bp)
AGGCTAGTTTTCTTGTTGTTGTACA
LOC_Os01g22550
Os.53990.1.S1_at--328--751Chr01:12649984..12650008 (25 bp)
ATGTATTGCCACGATTGTTTTGTTC
LOC_Os01g22550
Os.53990.1.S1_at--672--2971Chr01:12649859..12649883 (25 bp)
AATGGATCTCCAACTGTTCTGGATG
LOC_Os01g22550
Target Sequence 
GGCCTGTTGAAGCATATCCACCATGGGCTCATGGCCCTGGATATATAGTCTCAAGGGACATTGCAAAGTTTATTGTTCAT
GGTCATCAAGAACGAACTCTTCAGTTATTCAAACTTGAAGATGTGGCAATGGGTATCTGGATACAACAGTACAAAAACAG
TGGCCAGAAAGTAAATTATGTGAATGATGACCGCTTCTATAGCGAAGGATGTGACTCCGATTATGTGCTTGCCCACTATC
AGAGCCCGAGGCTTATGATGTGTTTGTGGGAGAAGCTTCAAAAGGAGTATCAGCCGGTATGTTGTGAATAGTTTCTGCAT
CAGCGCCAACAATAGCGACAGGTAGTGAAGTCTCAAGTTGTGGTAGGCTAGTTTTCTTGTTGTTGTACAATGTATTGCCA
CGATTGTTTTGTTCGATGGCAAGTTTGTTGGGGGTCAATAGGTTTGGTTTTGTAGAGGAAAATATTGATCCATGTATACG
AAATTACGAGCTGGAAGACAAAAAAATGTTTTACAATGGATCTCCAACTGTTCTGGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53990.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis