Browse Element(s) Details


Os.27350.1.A1_at

Description gb:CB665017
DB_XREF= gi:29668742
DB_XREF=OSJNEd11B14.r
CLONE=OSJNEd11B14
TID=Os.27350.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27350 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g224306/11F-box domain containing protein
LOC_Os01g591903/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22390Os.45678.1.S1_at11/111+12567308..12577242Beige/BEACH domain containing protein, expressed
LOC_Os01g22390Os.52380.2.S1_at1/111+12567308..12577242Beige/BEACH domain containing protein, expressed
LOC_Os01g22400NANA1+12578413..12579776F-box domain containing protein, expressed
LOC_Os01g22410NANA1+12582249..12585485transposon protein, putative, unclassified
LOC_Os01g22420NANA1+12586116..12592274transposon protein, putative, unclassified
LOC_Os01g22430Os.27350.1.A1_at6/111+12597767..12599726F-box domain containing protein
LOC_Os01g22440OsAffx.11157.1.S1_at3/111+12603727..12604185hypothetical protein
LOC_Os01g22450OsAffx.11158.1.S1_at8/111+12610507..12612419hypothetical protein
LOC_Os01g22450Os.45671.1.S1_x_at5/111+12610507..12612419hypothetical protein
LOC_Os01g22450Os.45671.1.S1_at4/111+12610507..12612419hypothetical protein
LOC_Os01g22480Os.33000.1.S1_x_at11/111+12618924..12623156F-box domain containing protein, expressed
LOC_Os01g22480Os.33000.1.S2_at10/111+12618924..12623156F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27350.1.A1_at--67--6794Chr01:34520473..34520497 (25 bp)
GTTTATCCATTGTGGGTTCTAAATA
LOC_Os01g59190
Os.27350.1.A1_at--148--10115Chr01:34520503..34520527 (25 bp)
TATGTTAATTCCCTCTTGACTGACG
LOC_Os01g59190
Os.27350.1.A1_at--190--5251Chr01:12607064..12607088 (25 bp)
GAATCAGTGACCAGCGTTTATCTTG
NONE
Os.27350.1.A1_at--891--4595Chr01:34520545..34520569 (25 bp)
GCGTTTATCTTGCAAACCCAGTTAA
LOC_Os01g59190
Os.27350.1.A1_at--105--1814Chr01:25468251..25468277 (25 bp)
ACCCAGTTAAGTTTGCTTATCCTGA
NONE
Os.27350.1.A1_at--945--7831Chr01:12598206..12598230 (25 bp)
GGTACACTGTGCCATAATTCTGCAG
LOC_Os01g22430
Os.27350.1.A1_at--946--6591Chr01:12598182..12598206 (25 bp)
GATTGAGCAGTCACGAATTGAGCAT
LOC_Os01g22430
Os.27350.1.A1_at--336--5931Chr01:12598163..12598187 (25 bp)
GAGCATATGCTGATCGCTGTACGGA
LOC_Os01g22430
Os.27350.1.A1_at--243--771Chr01:12597971..12597995 (25 bp)
ATGTGTAAACAACGCATGCCAATGG
LOC_Os01g22430
Os.27350.1.A1_at--1004--2951Chr01:12597951..12597975 (25 bp)
AATGGCGCCTACAGCCTAACTTGTG
LOC_Os01g22430
Os.27350.1.A1_at--1006--3731Chr01:12597936..12597960 (25 bp)
CTAACTTGTGTTACTGTCATGTTCA
LOC_Os01g22430
Target Sequence 
GTTTATCCATTGTGGGTTCTAAATAAAAAATATGTTAATTCCCTCTTGACTGACGCCATGAATCAGTGACCAGCGTTTAT
CTTGCAAACCCAGTTAAGTTTGCTTATCCTGAACATTTTTCTGATAGTNCGTTGGTGAGNTAATCAGTTGGTCCTCTTTG
TGTAGGTTGANCAAATAAGGAGGCAAGATTNTAAGGATTCAAANTCATNGNGTTTAGTTAAGCAACACANCAAGGTACAC
TGTGCCATAATTCTGCAGATTGAGCAGTCACGAATTGAGCATATGCTGATCGCTGTACGGATCATGNTACTTCCTCTATT
TCATATTATAAGACTTTCTAGCATTGCCCCCATTCATATATATGTTAATAAATTTAGCCATATATATGTCCCTAGATTCA
TTAACATTTATATGAATGTGGCCAATGTTAGAAAGTCTTATACCCTGAAATGGAGGTAGTATAAAATAATGTGTAAACAA
CGCATGCCAATGGCGCCTACAGCCTAACTTGTGTTACTGTCATGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27350.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis