Browse Element(s) Details


Os.52380.2.S1_at

Description gb:AK066729.1
DB_XREF= gi:32976747
TID=Os.52380.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52380 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013077G21, full insert sequence.
FL= gb:AK066729.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g223901/11Beige/BEACH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22352Os.20260.1.S1_at11/111+12546764..12552513Peroxidase family protein, expressed
LOC_Os01g22352Os.1559.1.S1_x_at2/111+12546764..12552513Peroxidase family protein, expressed
LOC_Os01g22352OsAffx.6795.1.S1_at1/111+12546764..12552513Peroxidase family protein, expressed
LOC_Os01g22352OsAffx.15945.1.S1_at1/111+12546764..12552513Peroxidase family protein, expressed
LOC_Os01g22370Os.1563.1.S1_at11/111+12560670..12564737Peroxidase family protein, expressed
LOC_Os01g22370Os.1559.1.S1_x_at1/111+12560670..12564737Peroxidase family protein, expressed
LOC_Os01g22380Os.1564.1.S1_at11/111+12565243..12565941expressed protein
LOC_Os01g22390Os.45678.1.S1_at11/111+12567308..12577242Beige/BEACH domain containing protein, expressed
LOC_Os01g22390Os.52380.2.S1_at1/111+12567308..12577242Beige/BEACH domain containing protein, expressed
LOC_Os01g22400NANA1+12578413..12579776F-box domain containing protein, expressed
LOC_Os01g22410NANA1+12582249..12585485transposon protein, putative, unclassified
LOC_Os01g22420NANA1+12586116..12592274transposon protein, putative, unclassified
LOC_Os01g22430Os.27350.1.A1_at6/111+12597767..12599726F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52380.2.S1_at--608--7471Chr10:17408739..17408763 (25 bp)
GTGTGTTTGGAGGTATGGCTTATTC
NONE
Os.52380.2.S1_at--1005--7851Chr10:17408728..17408752 (25 bp)
GGTATGGCTTATTCGTGACACGCAT
NONE
Os.52380.2.S1_at--1095--9411Chr10:17408716..17408740 (25 bp)
TCGTGACACGCATCCAAAAAGCATG
NONE
Os.52380.2.S1_at--522--5531Chr10:17408683..17408707 (25 bp)
GAAAACATTTTGTATCAGCGTTGAT
NONE
Os.52380.2.S1_at--1077--10231Chr10:17408675..17408699 (25 bp)
TTTGTATCAGCGTTGATCATGCAAT
NONE
Os.52380.2.S1_at--824--6431Chr10:17408661..17408685 (25 bp)
GATCATGCAATAACTTTCTCTAATA
NONE
Os.52380.2.S1_at--303--3752Chr10:17408644..17408668 (25 bp)
CTCTAATAATCTACTACCTCTGTCC
NONE
Os.52380.2.S1_at--914--9971Chr10:17408630..17408654 (25 bp)
TACCTCTGTCCCACGATATAAGAAG
NONE
Os.52380.2.S1_at--794--6111Chr10:17408600..17408624 (25 bp)
GAGTGTTGGACACATTTATTAAGAA
NONE
Os.52380.2.S1_at--559--7651Chr10:17408412..17408436 (25 bp)
GGGAGTATTTGTTAGCTTTATAGCT
NONE
Os.52380.2.S1_at--1089--4871Chr10:17408398..17408422 (25 bp)
GCTTTATAGCTTTGTAATAGTACTT
NONE
Target Sequence 
GTGTGTTTGGAGGTATGGCTTATTCGTGACACGCATCCAAAAAGCATGGTTTCTTTGAAAACATTTTGTATCAGCGTTGA
TCATGCAATAACTTTCTCTAATAATCTACTACCTCTGTCCCACGATATAAGAAGTTTTAGAGTGTTGGACACATTTATTA
AGAAAGTAGGTAAAATTAAATATGTAAAGATTGTGATTGGTTGAGAAGTGGAAGTAGATGAGAAAAGTGAATGATGGATA
ATTGTGATTGGTTGGGAAGAGAATCTTGGTGAAGTTATATTTTGAGGCAAATTGTAAGTGATTAAAGTTGTTATATTTTG
GGACGGAGGGAGTATTTGTTAGCTTTATAGCTTTGTAATAGTACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52380.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis