Browse Element(s) Details


Os.1564.1.S1_at

Description gb:AK107756.1
DB_XREF= gi:32992965
TID=Os.1564.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1564 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1135C02.14 (B1135C02.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-A04, full insert sequence.
FL= gb:AK107756.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2238011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22352Os.20260.1.S1_at11/111+12546764..12552513Peroxidase family protein, expressed
LOC_Os01g22352Os.1559.1.S1_x_at2/111+12546764..12552513Peroxidase family protein, expressed
LOC_Os01g22352OsAffx.6795.1.S1_at1/111+12546764..12552513Peroxidase family protein, expressed
LOC_Os01g22352OsAffx.15945.1.S1_at1/111+12546764..12552513Peroxidase family protein, expressed
LOC_Os01g22370Os.1563.1.S1_at11/111+12560670..12564737Peroxidase family protein, expressed
LOC_Os01g22370Os.1559.1.S1_x_at1/111+12560670..12564737Peroxidase family protein, expressed
LOC_Os01g22380Os.1564.1.S1_at11/111+12565243..12565941expressed protein
LOC_Os01g22390Os.45678.1.S1_at11/111+12567308..12577242Beige/BEACH domain containing protein, expressed
LOC_Os01g22390Os.52380.2.S1_at1/111+12567308..12577242Beige/BEACH domain containing protein, expressed
LOC_Os01g22400NANA1+12578413..12579776F-box domain containing protein, expressed
LOC_Os01g22410NANA1+12582249..12585485transposon protein, putative, unclassified
LOC_Os01g22420NANA1+12586116..12592274transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1564.1.S1_at--267--2071Chr01:12565710..12565734 (25 bp)
ACATACCGGCCGCAGAACGTGTACG
LOC_Os01g22380
Os.1564.1.S1_at--385--5451Chr01:12565696..12565720 (25 bp)
GAACGTGTACGGATTCGGCGGCTTC
LOC_Os01g22380
Os.1564.1.S1_at--125--7911Chr01:12565686..12565710 (25 bp)
GGATTCGGCGGCTTCTACCCTGGCC
LOC_Os01g22380
Os.1564.1.S1_at--221--8451Chr01:12565666..12565690 (25 bp)
TGGCCCCAACATCAACTGGGTGTTC
LOC_Os01g22380
Os.1564.1.S1_at--1154--551Chr01:12565360..12565384 (25 bp)
ATCCTGTATCTGTGTGTTGAAGTGT
LOC_Os01g22380
Os.1564.1.S1_at--729--2011Chr01:12565319..12565343 (25 bp)
ACTAATCTAGGTTGTTCGTGCATGC
LOC_Os01g22380
Os.1564.1.S1_at--160--9551Chr01:12565314..12565338 (25 bp)
TCTAGGTTGTTCGTGCATGCTGTTA
LOC_Os01g22380
Os.1564.1.S1_at--1153--3991Chr01:12565303..12565327 (25 bp)
CGTGCATGCTGTTAATCTCATCTAC
LOC_Os01g22380
Os.1564.1.S1_at--499--451Chr01:12565284..12565308 (25 bp)
ATCTACATTTCCACTTCTTCAGAGG
LOC_Os01g22380
Os.1564.1.S1_at--816--10551Chr01:12565270..12565294 (25 bp)
TTCTTCAGAGGTTTACTGTCTACTA
LOC_Os01g22380
Os.1564.1.S1_at--583--3691Chr01:12565255..12565279 (25 bp)
CTGTCTACTAATGAAGTGGTGGGCT
LOC_Os01g22380
Target Sequence 
ACATACCGGCCGCAGAACGTGTACGGATTCGGCGGCTTCTACCCTGGCCCCAACATCAACTGGGTGTTCCCCGGCCCCAA
CGGCGTCACGCCGCANGTCGGCTTCGGCGGGATGNCNGGGCTCCTCCTCCTCCGTCTTCCCCGGCGCCGGTGGTGCCTCG
CCGCTCACGCCCGGCGGCGGCGTCATCGGCATCCATGGCGCCACCAAGAAGCCGTGATCATAGGGCATCATGAGGCTTCT
TGGCCCAACCCTCTTAAGTAAATAAGAATGACGAAGGCGTGCTTAGCTAGCTAGTACTATCTAGGTTCGTGTTATGTAGT
AGTAGTAGGTGTTTAATTAACTTTGATCTGTATCCTGTATCTGTGTGTTGAAGTGTGTTGTTTCTGTGTGAAACTAATCT
AGGTTGTTCGTGCATGCTGTTAATCTCATCTACATTTCCACTTCTTCAGAGGTTTACTGTCTACTAATGAAGTGGTGGGC
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1564.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis