Browse Element(s) Details


Os.4023.1.S1_at

Description gb:AK064909.1
DB_XREF= gi:32974927
TID=Os.4023.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4023 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative CRK1 protein (P0560B06.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000M03, full insert sequence.
FL= gb:AK064909.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2702011/11transposon protein, putative, unclassified, expressed
LOC_Os01g2686410/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26980OsAffx.17848.1.S1_x_at11/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.1.S1_at11/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.4.S1_x_at7/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.5.S1_x_at7/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.2.S1_x_at3/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980Os.54363.1.S1_at2/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.4.S1_at2/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.3.S1_x_at2/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.11160.1.S1_s_at1/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26990Os.28943.1.S1_x_at1/111+15365310..15368376retrotransposon protein, putative, unclassified
LOC_Os01g27000NANA1+15368998..15374622retrotransposon protein, putative, unclassified
LOC_Os01g27010OsAffx.7233.1.S1_at1/111+15383155..15385618retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g27020Os.4023.1.S1_at11/111+15386316..15394420transposon protein, putative, unclassified, expressed
LOC_Os01g27020OsAffx.23411.1.S1_at11/111+15386316..15394420transposon protein, putative, unclassified, expressed
LOC_Os01g27030OsAffx.31892.4.S1_at2/111+15397211..15397731hypothetical protein
LOC_Os01g27030Os.50256.1.S1_at1/111+15397211..15397731hypothetical protein
LOC_Os01g27040Os.32330.2.S1_x_at11/111+15402729..15410171Chromatin remodelling complex ATPase chain, putative, expressed
LOC_Os01g27040Os.32330.1.S1_at10/111+15402729..15410171Chromatin remodelling complex ATPase chain, putative, expressed
LOC_Os01g27050NANA1+15412423..15413785Flavin-binding monooxygenase-like family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4023.1.S1_at--651--2612Chr01:15393843..15393867 (25 bp)
AACCCATTGGGATCCAGTCGTCATA
LOC_Os01g27020
Os.4023.1.S1_at--980--692Chr01:15393880..15393904 (25 bp)
ATGAGCACCAGGATGCTTCCTTCAG
LOC_Os01g27020
Os.4023.1.S1_at--973--7692Chr01:15393927..15393951 (25 bp)
GGGTCCTCACAAACATGGTCTGGAC
LOC_Os01g27020
Os.4023.1.S1_at--494--8092Chr01:15393948..15393972 (25 bp)
GGACCATTGGTTGATCCAGCAGCTC
LOC_Os01g27020
Os.4023.1.S1_at--1034--6352Chr01:15393960..15393984 (25 bp)
GATCCAGCAGCTCTAGGGCAATCGA
LOC_Os01g27020
Os.4023.1.S1_at--512--2732Chr01:15393993..15394017 (25 bp)
AAGCAAACTGCCCTAGATGCGAAGG
LOC_Os01g27020
Os.4023.1.S1_at--715--6352Chr01:15394008..15394032 (25 bp)
GATGCGAAGGCTGCAGCTTATTCAA
LOC_Os01g27020
Os.4023.1.S1_at--198--9472Chr01:15394164..15394188 (25 bp)
TCTGTTTTGTTCCTTTCGTGCGGAA
LOC_Os01g27020
Os.4023.1.S1_at--388--2292Chr01:15394295..15394319 (25 bp)
AAAGGTATTTAAGCTCAACGTGACA
LOC_Os01g27020
Os.4023.1.S1_at--766--2552Chr01:15394311..15394335 (25 bp)
AACGTGACAATTCGGTTGCCCTTGT
LOC_Os01g27020
Os.4023.1.S1_at--1062--811Chr01:15394373..15394397 (25 bp)
ATGGTTCATGCATCTCAGTGGAATT
LOC_Os01g27020
Target Sequence 
AACCCATTGGGATCCAGTCGTCATATGGAGCCTATGTATGAGCACCAGGATGCTTCCTTCAGCACAGTAGTCCCCATCCA
GAAGGGGTCCTCACAAACATGGTCTGGACCATTGGTTGATCCAGCAGCTCTAGGGCAATCGAGGCGGAAGAAGCAAACTG
CCCTAGATGCGAAGGCTGCAGCTTATTCAAAGCAGCTCCAGAAGGACAAGGGCGGAACAAGAGCACGATAAGAGGAACTC
AATACAGTTTCTTTTACATGTTTTTCATCGAGTTTAAGGGGAAGTTTTTAGAATGGTCAGTCTGTAGATGAATTATTTCC
TTCTGTTTTGTTCCTTTCGTGCGGAAAGAAAGCGGTAGTGCTTCAGTAGGAAGAAATTCATCCAGCTTATGTATATGTGG
TAGTGTTTTCTGTTCATCTCAGGTGCTTCTGAACAAATTGGTGTCCGGAACCAAAGGTATTTAAGCTCAACGTGACAATT
CGGTTGCCCTTGTGTATATATGGAGTATTCTTTCTTCTGTAAATAAACGGATGGTTCATGCATCTCAGTGGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4023.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis