Browse Element(s) Details


Os.53136.1.S1_at

Description gb:AK070966.1
DB_XREF= gi:32980989
TID=Os.53136.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53136 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023069E21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023069E21, full insert sequence.
FL= gb:AK070966.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4589010/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45860Os.39896.1.S1_at11/116+27748489..27755340molybdenum cofactor sulfurase, putative, expressed
LOC_Os06g45860Os.14889.1.S1_at11/116+27748489..27755340molybdenum cofactor sulfurase, putative, expressed
LOC_Os06g45870Os.54217.1.S1_at11/116+27755426..27759085expressed protein
LOC_Os06g45880NANA6+27770299..27775101retrotransposon protein, putative, unclassified, expressed
LOC_Os06g45890Os.53136.1.S1_at10/116+27776577..27779677myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os06g45900Os.21014.1.S1_at1/116+27781934..27790012cyclophilin-RNA interacting protein, putative
LOC_Os06g45910Os.21014.1.S1_at11/116+27791517..27797565cyclophilin-RNA interacting protein, putative, expressed
LOC_Os06g45920OsAffx.28124.1.S1_at11/116+27799910..27801151ZmEBE-1 protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53136.1.S1_at--1079--3011Chr06:27779202..27779225 (24 bp)
AATGCTGACCACTGATCTGAACCTG
LOC_Os06g45890
Os.53136.1.S1_at--1120--8531Chr06:27779224..27779248 (25 bp)
TGGACCTGACCATTTCATCTTCTTG
LOC_Os06g45890
Os.53136.1.S1_at--516--9591Chr06:27779244..27779268 (25 bp)
TCTTGGCTGTCCTGATCATATGATC
LOC_Os06g45890
Os.53136.1.S1_at--641--6251Chr06:27779277..27779301 (25 bp)
GATGGGCCTGTGTATAGCTGCATTA
LOC_Os06g45890
Os.53136.1.S1_at--277--10091Chr06:27779468..27779492 (25 bp)
TAGGTTTTTCAGTAGCGCATGCACG
LOC_Os06g45890
Os.53136.1.S1_at--449--4991Chr06:27779484..27779508 (25 bp)
GCATGCACGCGTTTATCTGTATAGT
LOC_Os06g45890
Os.53136.1.S1_at--694--3171NONE
AATTGTTCGTTCGATCAGAGACCGG
NONE
Os.53136.1.S1_at--1029--8951Chr06:27779579..27779603 (25 bp)
TGACAGTTTTTGCTTCTCTTGGGTA
LOC_Os06g45890
Os.53136.1.S1_at--390--5691Chr06:27779604..27779628 (25 bp)
GACTTCTCTGTTGAATTTCTCACCT
LOC_Os06g45890
Os.53136.1.S1_at--977--10571Chr06:27779620..27779644 (25 bp)
TTCTCACCTTTCATCATCTGGGCAG
LOC_Os06g45890
Os.53136.1.S1_at--1074--3431Chr06:27779642..27779666 (25 bp)
CAGTTCCCCTATTTCTGATCGAATT
LOC_Os06g45890
Target Sequence 
AATGCTGACCACTGATCTGAACCTGGACCTGACCATTTCATCTTCTTGGCTGTCCTGATCATATGATCATTCAGTTGATG
GGCCTGTGTATAGCTGCATTATATTTGTGCATATATGTAGTAGTATGTGTACAAAAATAACGCGGAGAGAGAGAGCGTCA
GGCTAGTAGTATTTGCAGGTTACCTGATGAGATGATCTTAGAGAGTGTAGTAATATTCTGGAGATTTCTTTAGGATTATT
TTCTTATGGTCAGACACAGCATTTTATTAGGTTTTTCAGTAGCGCATGCACGCGTTTATCTGTATAGTTTTCTTTCTATT
ATTAATTGTTCGTTCGATCAGAGACCGGGGACTTCATACGAAGACGGGTGAGAAATTTTGACAGTTTTTGCTTCTCTTGG
GTAGACTTCTCTGTTGAATTTCTCACCTTTCATCATCTGGGCAGTTCCCCTATTTCTGATCGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53136.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis