Browse Element(s) Details


Os.39896.1.S1_at

Description gb:CB642109
DB_XREF= gi:29637100
DB_XREF=OSJNEb02B24.f
CLONE=OSJNEb02B24
TID=Os.39896.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.39896 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_564001.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4586011/11molybdenum cofactor sulfurase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45820Os.9440.1.S1_a_at11/116+27723579..27727261Cell division protein ftsH homolog, putative, expressed
LOC_Os06g45830OsAffx.5119.1.S1_at11/116+27727573..27732665conserved oligomeric Golgi complex component, putative, expressed
LOC_Os06g45840Os.22374.1.S1_a_at10/116+27733727..27739380myb family transcription factor, putative, expressed
LOC_Os06g45850Os.16635.1.S1_at11/116+27742195..27746055OTU-like cysteine protease family protein, putative, expressed
LOC_Os06g45860Os.39896.1.S1_at11/116+27748489..27755340molybdenum cofactor sulfurase, putative, expressed
LOC_Os06g45860Os.14889.1.S1_at11/116+27748489..27755340molybdenum cofactor sulfurase, putative, expressed
LOC_Os06g45870Os.54217.1.S1_at11/116+27755426..27759085expressed protein
LOC_Os06g45880NANA6+27770299..27775101retrotransposon protein, putative, unclassified, expressed
LOC_Os06g45890Os.53136.1.S1_at10/116+27776577..27779677myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0009408biological_processresponse to heat
GO:0009688biological_processabscisic acid biosynthesis
GO:0009734biological_processauxin mediated signaling pathway
GO:0010182biological_processsugar mediated signaling
GO:0018315biological_processmolybdenum incorporation into molybdenum-molybdopterin complex
GO:0008265molecular_functionMo-molybdopterin cofactor sulfurase activity
GO:0009000molecular_functionselenocysteine lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39896.1.S1_at--502--1231Chr06:27748520..27748544 (25 bp)
AGTTCGGTGGCGACTATGGCTACCC
LOC_Os06g45860
Os.39896.1.S1_at--94--2891Chr06:27749019..27749042 (24 bp)
AAGGGATGGCTTACCTGGACCATGC
LOC_Os06g45860
Os.39896.1.S1_at--872--591Chr06:27749039..27749063 (25 bp)
ATGCCGGTGCGACGCTGTATTCAGA
LOC_Os06g45860
Os.39896.1.S1_at--14--8731Chr06:27749079..27749103 (25 bp)
TGTCTTGAAAGACCTTGCATCCAAT
LOC_Os06g45860
Os.39896.1.S1_at--176--8651Chr06:27749109..27749239 (25 bp)
TGGGAACCCACATAGTCAGAGTGAT
LOC_Os06g45860
Os.39896.1.S1_at--35--10511Chr06:27749239..27749263 (25 bp)
TTCAAGCATGGCTGCGAGTGACCTC
LOC_Os06g45860
Os.39896.1.S1_at--913--6111Chr06:27749254..27749278 (25 bp)
GAGTGACCTCGTTACTGCTGCACGC
LOC_Os06g45860
Os.39896.1.S1_at--894--9091Chr06:27749269..27749650 (25 bp)
TGCTGCACGCCATCAGGTTTTAAAA
LOC_Os06g45860
Os.39896.1.S1_at--428--2251Chr06:27749648..27749672 (25 bp)
AAATACTTCAATGCATCTCCCAGAG
LOC_Os06g45860
Os.39896.1.S1_at--1051--331Chr06:27749674..27749698 (25 bp)
ATACAAGTGCATATTTACCTCTGGG
LOC_Os06g45860
Os.39896.1.S1_at--309--2491Chr06:27749701..27749725 (25 bp)
AACAGCAGCTCTGAAACTTGTTGGT
LOC_Os06g45860
Target Sequence 
AGTTCGGTGGCGACTATGGCTACCCGGGCGCGCCCAAGGGCGTCGACGAGATGCGCGCCGCCGAGTTCAAGCGGCTTGAA
GGGATGGCTTACCTGGACCATGCCGGTGCGACGCTGTATTCAGAGGCGCAGATGGCGGATGTCTTGAAAGACCTTGCATC
CAATGTATATGGGAACCCACATAGTCAGAGTGATTCAAGCATGGCTGCGAGTGACCTCGTTACTGCTGCACGCCATCAGG
TTTTAAAATACTTCAATGCATCTCCCAGAGAATACAAGTGCATATTTACCTCTGGGGCAACAGCAGCTCTGAAACTTGTT
GGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39896.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis