Browse Element(s) Details


Os.22374.1.S1_a_at

Description gb:AK070871.1
DB_XREF= gi:32980894
TID=Os.22374.1
CNT=50
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22374 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) partial mRNA for MYB29 protein
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023073K02, full insert sequence.
FL= gb:AK070871.1 gb:AK105693.1 gb:AK119512.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4584010/11myb family transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45800OsAffx.15942.1.S1_at11/116+27708822..27718177PAP/25A associated domain containing protein, expressed
LOC_Os06g45810Os.20602.2.S1_x_at11/116+27718971..27721151hAT family dimerisation domain containing protein
LOC_Os06g45820Os.9440.1.S1_a_at11/116+27723579..27727261Cell division protein ftsH homolog, putative, expressed
LOC_Os06g45830OsAffx.5119.1.S1_at11/116+27727573..27732665conserved oligomeric Golgi complex component, putative, expressed
LOC_Os06g45840Os.22374.1.S1_a_at10/116+27733727..27739380myb family transcription factor, putative, expressed
LOC_Os06g45850Os.16635.1.S1_at11/116+27742195..27746055OTU-like cysteine protease family protein, putative, expressed
LOC_Os06g45860Os.39896.1.S1_at11/116+27748489..27755340molybdenum cofactor sulfurase, putative, expressed
LOC_Os06g45860Os.14889.1.S1_at11/116+27748489..27755340molybdenum cofactor sulfurase, putative, expressed
LOC_Os06g45870Os.54217.1.S1_at11/116+27755426..27759085expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22374.1.S1_a_at--1159--8691Chr06:27735129..27735153 (25 bp)
TGTCCATGAACTTAACTAGCCCCAA
LOC_Os06g45840
Os.22374.1.S1_a_at--456--2531NONE
AACTTTGCGGCACATCTGAGCTTGC
NONE
Os.22374.1.S1_a_at--418--3851Chr06:27734513..27734537 (25 bp)
CTGAGCTTGCTGTCATCATGTAATT
LOC_Os06g45840
Os.22374.1.S1_a_at--494--9591Chr06:27734451..27734475 (25 bp)
TCTTGGATCTCCACAGAGTTGCCAT
LOC_Os06g45840
Os.22374.1.S1_a_at--547--3551Chr06:27734346..27734453 (25 bp)
CATCTCCCGTTCATGGTAACAAGTG
LOC_Os06g45840
Os.22374.1.S1_a_at--1109--8051Chr06:27734315..27734339 (25 bp)
GGAGAACTGCTTGTATGCGGACGAA
LOC_Os06g45840
Os.22374.1.S1_a_at--336--5791Chr06:27734296..27734320 (25 bp)
GACGAAGCTTCAGTTGTTTCCACAA
LOC_Os06g45840
Os.22374.1.S1_a_at--356--8831Chr06:27734231..27734255 (25 bp)
TGATCCGGCAGTTTACCAACGCTAG
LOC_Os06g45840
Os.22374.1.S1_a_at--639--4491Chr06:27734195..27734219 (25 bp)
GCCGTGGCATCTGTATAGCTTCCAA
LOC_Os06g45840
Os.22374.1.S1_a_at--8--3551Chr06:27734177..27734201 (25 bp)
CTTCCAATAATGCTCTAACCCTAGG
LOC_Os06g45840
Os.22374.1.S1_a_at--365--311Chr06:27734121..27734145 (25 bp)
ATAGCCAGTTTTGTGTGCTCAGCAA
LOC_Os06g45840
Target Sequence 
TGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACATCTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATT
AAGTCTGAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCATGGTAACAAGTGAGTGAGGGAGAAC
TGCTTGTATGCGGACGAAGCTTCAGTTGTTTCCACAAGACGTTCTTGTGTTCTCTTTGTACTGGAGTTGTGGACGGCTGA
TCCGGCAGTTTACCAACGCTAGCACGTGTTGTGGCCGTGGCATCTGTATAGCTTCCAATAATGCTCTAACCCTAGGCTAG
TTTTGCTCATCAATCATGTTCATGTAGATAGCCAGTTTTGTGTGCTCAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22374.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis