Browse Element(s) Details


Os.54217.1.S1_at

Description gb:AK102577.1
DB_XREF= gi:32987786
TID=Os.54217.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54217 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033097P03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033097P03, full insert sequence.
FL= gb:AK102577.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4587011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45830OsAffx.5119.1.S1_at11/116+27727573..27732665conserved oligomeric Golgi complex component, putative, expressed
LOC_Os06g45840Os.22374.1.S1_a_at10/116+27733727..27739380myb family transcription factor, putative, expressed
LOC_Os06g45850Os.16635.1.S1_at11/116+27742195..27746055OTU-like cysteine protease family protein, putative, expressed
LOC_Os06g45860Os.39896.1.S1_at11/116+27748489..27755340molybdenum cofactor sulfurase, putative, expressed
LOC_Os06g45860Os.14889.1.S1_at11/116+27748489..27755340molybdenum cofactor sulfurase, putative, expressed
LOC_Os06g45870Os.54217.1.S1_at11/116+27755426..27759085expressed protein
LOC_Os06g45880NANA6+27770299..27775101retrotransposon protein, putative, unclassified, expressed
LOC_Os06g45890Os.53136.1.S1_at10/116+27776577..27779677myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os06g45900Os.21014.1.S1_at1/116+27781934..27790012cyclophilin-RNA interacting protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54217.1.S1_at--949--6791Chr06:27756204..27756228 (25 bp)
GTTTTGTCTGACGAGGAGGTGCCCC
LOC_Os06g45870
Os.54217.1.S1_at--1129--8131Chr06:27755936..27755960 (25 bp)
GGAAACTTGTCCCTGGAAGGCTTCT
LOC_Os06g45870
Os.54217.1.S1_at--59--7531Chr06:27755802..27755826 (25 bp)
GTGGACCAGCATGTCATTGCACAAA
LOC_Os06g45870
Os.54217.1.S1_at--553--9871Chr06:27755759..27755783 (25 bp)
TACAGTACTGCGTTTTCTCTTGCAT
LOC_Os06g45870
Os.54217.1.S1_at--383--9611Chr06:27755735..27755759 (25 bp)
TCATCATCATATACCTGCCACTGTG
LOC_Os06g45870
Os.54217.1.S1_at--689--10731Chr06:27755707..27755731 (25 bp)
TTGCTTGCTCCCTGTTGTTACGAGA
LOC_Os06g45870
Os.54217.1.S1_at--452--1871Chr06:27755688..27755712 (25 bp)
ACGAGACGTGATGCTCTGTACATAT
LOC_Os06g45870
Os.54217.1.S1_at--276--7591Chr06:27755658..27755682 (25 bp)
GGGCTATACCTGCTATGATTTCTTA
LOC_Os06g45870
Os.54217.1.S1_at--65--2051Chr06:27755587..27755611 (25 bp)
ACTTAGCTGTCCTCTAGTTTCTAGA
LOC_Os06g45870
Os.54217.1.S1_at--261--10331Chr06:27755481..27755505 (25 bp)
TTTCATCGTGTATGCAACATGCCCT
LOC_Os06g45870
Os.54217.1.S1_at--1113--4291Chr06:27755459..27755483 (25 bp)
CCTCACCTCTCCTTGTTAATAGATA
LOC_Os06g45870
Target Sequence 
GTTTTGTCTGACGAGGAGGTGCCCCCTACAAGGAAACTTGTCCCTGGAAGGCTTCTCTATCTTGAGGAAAGAGTTTGAGC
CTGAAGAAAGAGTGTTGTGGCGATATTTGAGTTCAAACGTGGATGAAATCGTATCATCGAACTCTGAAGTTGTGCACTCT
CAAATGTGGACCAGCATGTCATTGCACAAAGTGGACTGAAACACAACTTACAGTACTGCGTTTTCTCTTGCATCATCATC
ATATACCTGCCACTGTGCTTTTGCTTGCTCCCTGTTGTTACGAGACGTGATGCTCTGTACATATGGTATGGGCTATACCT
GCTATGATTTCTTAACTGCTTCTACTTCTAGACCTTTAGGTTGACAATGTAAGTGTTTTTACTTAGCTGTCCTCTAGTTT
CTAGAGCCATTTCCCCTTCAGGTACAAGGGATCAAATTCAAATGGCGTCGTATAGCATAGAGCAATCTGACCTTCTAGTT
AAGGCATTTCATCGTGTATGCAACATGCCCTCACCTCTCCTTGTTAATAGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54217.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis