Browse Element(s) Details


OsAffx.5119.1.S1_at

Description tigr:9634.m04454
TID=OsAffx.5119.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4583011/11conserved oligomeric Golgi complex component, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45780OsAffx.5118.1.S1_x_at11/116+27703859..27704929hypothetical protein
LOC_Os06g45780Os.5212.2.S1_at6/116+27703859..27704929hypothetical protein
LOC_Os06g45780OsAffx.5136.1.S1_at3/116+27703859..27704929hypothetical protein
LOC_Os06g45790OsAffx.28123.1.S1_at11/116+27706148..27706591hypothetical protein
LOC_Os06g45800OsAffx.15942.1.S1_at11/116+27708822..27718177PAP/25A associated domain containing protein, expressed
LOC_Os06g45810Os.20602.2.S1_x_at11/116+27718971..27721151hAT family dimerisation domain containing protein
LOC_Os06g45820Os.9440.1.S1_a_at11/116+27723579..27727261Cell division protein ftsH homolog, putative, expressed
LOC_Os06g45830OsAffx.5119.1.S1_at11/116+27727573..27732665conserved oligomeric Golgi complex component, putative, expressed
LOC_Os06g45840Os.22374.1.S1_a_at10/116+27733727..27739380myb family transcription factor, putative, expressed
LOC_Os06g45850Os.16635.1.S1_at11/116+27742195..27746055OTU-like cysteine protease family protein, putative, expressed
LOC_Os06g45860Os.39896.1.S1_at11/116+27748489..27755340molybdenum cofactor sulfurase, putative, expressed
LOC_Os06g45860Os.14889.1.S1_at11/116+27748489..27755340molybdenum cofactor sulfurase, putative, expressed
LOC_Os06g45870Os.54217.1.S1_at11/116+27755426..27759085expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5119.1.S1_at--447--9731Chr06:27728477..27728501 (25 bp)
TAACTTTACCCCAGCAGTTGGAGCC
LOC_Os06g45830
OsAffx.5119.1.S1_at--245--8011Chr06:27728413..27728437 (25 bp)
GGAGGCTCAGTTCTTTGCTACTGAA
LOC_Os06g45830
OsAffx.5119.1.S1_at--438--5931Chr06:27728089..27728113 (25 bp)
GAGCAGCTGCGAGGGATCCATTACA
LOC_Os06g45830
OsAffx.5119.1.S1_at--48--2011Chr06:27728031..27728055 (25 bp)
ACATAGAGTACCTGAGCAACGTCCT
LOC_Os06g45830
OsAffx.5119.1.S1_at--439--4611Chr06:27727929..27727953 (25 bp)
GCGACCTCATCAAGTCTGACGGCGG
LOC_Os06g45830
OsAffx.5119.1.S1_at--451--491Chr06:27727878..27727902 (25 bp)
ATCTGGTCTGCAAGATCCGGCGCAT
LOC_Os06g45830
OsAffx.5119.1.S1_at--768--3291Chr06:27727830..27727854 (25 bp)
CAAAGGTTGCCTTGGTTTGTTCACG
LOC_Os06g45830
OsAffx.5119.1.S1_at--981--4531Chr06:27727806..27727830 (25 bp)
GCCCTGTAACATCGTGTGCATCCAT
LOC_Os06g45830
OsAffx.5119.1.S1_at--661--10391Chr06:27727771..27727795 (25 bp)
TTTTCCCACATCCTGAGCAAACTGA
LOC_Os06g45830
OsAffx.5119.1.S1_at--341--1971Chr06:27727751..27727775 (25 bp)
ACTGATCCTGCCGACGAGTGGTTGA
LOC_Os06g45830
OsAffx.5119.1.S1_at--228--10471Chr06:27727701..27727725 (25 bp)
TTACCATTCTGCATCTTGGCTACAG
LOC_Os06g45830
Target Sequence 
TAACTTTACCCCAGCAGTTGGAGCCACTTGCAGAAGGTATCTCAGGCGGTGAGGCTGGCAACGAGGAGGCTCAGTTCTTT
GCTACTGAATGGATATTTAAGGTCGCGGAAGGCGCCACCGCGCTGTTCATGGAGCAGCTGCGAGGGATCCATTACATCAC
CGACCGAGGCGCGCAGCAGCTGGCGGCGGACATAGAGTACCTGAGCAACGTCCTCTCGGCGCTGTCCATGCCGATCCCAC
CCTTCCTCGCCACCTTCCACACCTGCATCTCCACCCCGAGAGACCAGGTCCGCGACCTCATCAAGTCTGACGGCGGCAGC
CAGCTCGACCTCCCCACCGCCCATCTGGTCTGCAAGATCCGGCGCATCTCGTCATCAGATTAGTGAAACACAAAGGTTGC
CTTGGTTTGTTCACGCCCTGTAACATCGTGTGCATCCATCCCTCCACCGTTTTCCCACATCCTGAGCAAACTGATCCTGC
CGACGAGTGGTTGACAGTTTGACATGTGCTTGTAATTCTTTACCATTCTGCATCTTGGCTACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5119.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis