Browse Element(s) Details


Os.16635.1.S1_at

Description gb:AK073551.1
DB_XREF= gi:32983574
TID=Os.16635.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.16635 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033044I12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044I12, full insert sequence.
FL= gb:AK073551.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4585011/11OTU-like cysteine protease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45800OsAffx.15942.1.S1_at11/116+27708822..27718177PAP/25A associated domain containing protein, expressed
LOC_Os06g45810Os.20602.2.S1_x_at11/116+27718971..27721151hAT family dimerisation domain containing protein
LOC_Os06g45820Os.9440.1.S1_a_at11/116+27723579..27727261Cell division protein ftsH homolog, putative, expressed
LOC_Os06g45830OsAffx.5119.1.S1_at11/116+27727573..27732665conserved oligomeric Golgi complex component, putative, expressed
LOC_Os06g45840Os.22374.1.S1_a_at10/116+27733727..27739380myb family transcription factor, putative, expressed
LOC_Os06g45850Os.16635.1.S1_at11/116+27742195..27746055OTU-like cysteine protease family protein, putative, expressed
LOC_Os06g45860Os.39896.1.S1_at11/116+27748489..27755340molybdenum cofactor sulfurase, putative, expressed
LOC_Os06g45860Os.14889.1.S1_at11/116+27748489..27755340molybdenum cofactor sulfurase, putative, expressed
LOC_Os06g45870Os.54217.1.S1_at11/116+27755426..27759085expressed protein
LOC_Os06g45880NANA6+27770299..27775101retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16635.1.S1_at--915--7951Chr06:27744756..27744780 (25 bp)
GGATCATCTGACTTTACAAGCAGCT
LOC_Os06g45850
Os.16635.1.S1_at--84--1611Chr06:27744777..27745286 (25 bp)
AGCTGCAGACAGGTTTGGTGCCAAA
LOC_Os06g45850
Os.16635.1.S1_at--972--7131Chr06:27745301..27745325 (25 bp)
GTCATTCAGAGACACCTGCCTAATT
LOC_Os06g45850
Os.16635.1.S1_at--1103--10791Chr06:27745508..27745664 (25 bp)
TTGTACGCAACTGACGATCTCCTAA
LOC_Os06g45850
Os.16635.1.S1_at--349--3611Chr06:27745685..27745709 (25 bp)
CATTGGTTGTTCTAGGGCGTCTCAC
LOC_Os06g45850
Os.16635.1.S1_at--116--10311Chr06:27745745..27745769 (25 bp)
TTTCCCTTCAAGTTAGCAGCATCTG
LOC_Os06g45850
Os.16635.1.S1_at--169--3551Chr06:27745764..27745788 (25 bp)
CATCTGTGGTGCTTACTAGTTTTAC
LOC_Os06g45850
Os.16635.1.S1_at--400--3331Chr06:27745809..27745833 (25 bp)
CACTGCAATTCCCTAACCTGAAAGA
LOC_Os06g45850
Os.16635.1.S1_at--614--5151Chr06:27745895..27745919 (25 bp)
GCAACTTTCAGATCCATGAGTCCCA
LOC_Os06g45850
Os.16635.1.S1_at--665--6731Chr06:27745921..27745945 (25 bp)
GTTCTACCCGGCGAGATGTAGTTTT
LOC_Os06g45850
Os.16635.1.S1_at--1162--6411Chr06:27745966..27745990 (25 bp)
GATCTATCCAGGTGCTTGCTTTGTA
LOC_Os06g45850
Target Sequence 
GGATCATCTGACTTTACAAGCAGCTGCAGACAGGTTTGGTGCCAAAATTTGTTTGCTGACGTCATTCAGAGACACCTGCC
TAATTGAGATAGTCCCCAGGGATGTGACTCCCACAAGGGAGTTGTGGCTAAGCTTCTGGTGTGAAGTGCACTACAATTCC
TTGTACGCAACTGACGATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTCTAGGGCGTCTCACCTCGAGCTTC
CTTGAGCTTCTGCTGCTGCAGTTCTTTTCCCTTCAAGTTAGCAGCATCTGTGGTGCTTACTAGTTTTACTACCATGGCAA
CCCAGCCGGCACTGCAATTCCCTAACCTGAAAGAAGAGCTTATGTACAGTTTAACTTTCAGTAGTATGTTTCGCAAGGTA
CAAACCTNGAACTGTGCAACTTTCAGATCCATGAGTCCCATGTTCTACCCGGCGAGATGTAGTTTTGTTTTTGCATAGTA
TATTGTGATCTATCCAGGTGCTTGCTTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16635.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis