Browse Element(s) Details


OsAffx.23507.1.S1_at

Description tigr:9629.m03213
TID=OsAffx.23507.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3427011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34220OsAffx.2150.1.S1_at11/111+19196558..19197580F-box domain containing protein
LOC_Os01g34230Os.46025.1.S1_at11/111+19202362..19203183hypothetical protein
LOC_Os01g34240NANA1+19205536..19206075hypothetical protein
LOC_Os01g34250OsAffx.22385.1.S1_x_at2/111+19206551..19210963retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g34250OsAffx.20329.1.S1_at1/111+19206551..19210963retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g34260OsAffx.23506.1.S1_at9/111+19214999..19215232hypothetical protein
LOC_Os01g34270OsAffx.23507.1.S1_at11/111+19219586..19220617F-box domain containing protein
LOC_Os01g34290Os.26886.6.S1_s_at11/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290Os.26886.2.S1_s_at11/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290Os.26886.1.S1_x_at11/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.16467.1.S1_at7/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.26148.1.S1_at6/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290Os.26886.3.S1_x_at5/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.26148.1.S1_x_at5/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.31076.1.S1_x_at3/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.16244.1.S1_x_at1/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34300OsAffx.21295.1.S1_at8/111+19234338..19234746hypothetical protein
LOC_Os01g34310NANA1+19237412..19244827retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23507.1.S1_at--1161--7971Chr01:19220061..19220085 (25 bp)
GGATGCCATACTACCTGAGAATGCT
LOC_Os01g34270
OsAffx.23507.1.S1_at--551--8051Chr01:19220015..19220039 (25 bp)
GGAGATGCATCTAACAGACCTTGAT
LOC_Os01g34270
OsAffx.23507.1.S1_at--981--3911Chr01:19219925..19219949 (25 bp)
CTGGCATGGGTCAGATGAGTTGTTC
LOC_Os01g34270
OsAffx.23507.1.S1_at--23--6651Chr01:19219907..19219931 (25 bp)
GTTGTTCAAGGCAACTACCCCATAC
LOC_Os01g34270
OsAffx.23507.1.S1_at--711--4171Chr01:19219889..19219913 (25 bp)
CCCATACCATCACGAGTGGTTCTCG
LOC_Os01g34270
OsAffx.23507.1.S1_at--940--7891Chr01:19219872..19219896 (25 bp)
GGTTCTCGCTGTACAGGATGGTCAA
LOC_Os01g34270
OsAffx.23507.1.S1_at--582--6191Chr01:19219843..19219867 (25 bp)
GAGGAAATCCCAGTTCATGACATCA
LOC_Os01g34270
OsAffx.23507.1.S1_at--851--6911Chr01:19219807..19219831 (25 bp)
GTAGTGCAGAGCTGTGACTCTTGCA
LOC_Os01g34270
OsAffx.23507.1.S1_at--941--3511Chr01:19219772..19219796 (25 bp)
CATGATCCCAGCGAGCTGTGATTTT
LOC_Os01g34270
OsAffx.23507.1.S1_at--660--5891Chr01:19219760..19219784 (25 bp)
GAGCTGTGATTTTGCTGCACTCTGT
LOC_Os01g34270
OsAffx.23507.1.S1_at--933--6251Chr01:19219696..19219720 (25 bp)
GATGGTGGCTCATACTATGCACTTT
LOC_Os01g34270
Target Sequence 
GGATGCCATACTACCTGAGAATGCTTGCTGCCCATGGTGACCAGATGGAGATGCATCTAACAGACCTTGATAGAGACAAC
GATAACAGCGTTGTGCTACTGCAGGAGACACAGAAGGTTGAGTTGCTTGGCGGCTGCTGGCATGGGTCAGATGAGTTGTT
CAAGGCAACTACCCCATACCATCACGAGTGGTTCTCGCTGTACAGGATGGTCAAACAGGAGGAAATCCCAGTTCATGACA
TCAAAAATGCCATAGTAGTGCAGAGCTGTGACTCTTGCACCCGCACCTACATGATCCCAGCGAGCTGTGATTTTGCTGCA
CTCTGTAGCAGAAATGCCTTCTACTACCTCAGGAAGCAGTTCGACGATGGTGGCTCATACTATGCACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23507.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis