Browse Element(s) Details


OsAffx.2150.1.S1_at

Description tigr:9629.m03208
TID=OsAffx.2150.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3422011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34190Os.17820.1.A1_at11/111+19175205..19178661G-patch domain containing protein, expressed
LOC_Os01g34200Os.28207.1.S1_at10/111+19180422..19184170rRNA processing protein, putative, expressed
LOC_Os01g34220OsAffx.2150.1.S1_at11/111+19196558..19197580F-box domain containing protein
LOC_Os01g34230Os.46025.1.S1_at11/111+19202362..19203183hypothetical protein
LOC_Os01g34240NANA1+19205536..19206075hypothetical protein
LOC_Os01g34250OsAffx.22385.1.S1_x_at2/111+19206551..19210963retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g34250OsAffx.20329.1.S1_at1/111+19206551..19210963retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g34260OsAffx.23506.1.S1_at9/111+19214999..19215232hypothetical protein
LOC_Os01g34270OsAffx.23507.1.S1_at11/111+19219586..19220617F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2150.1.S1_at--1033--7711Chr01:19197024..19197048 (25 bp)
GGGTGTCACACTACCTGAGAAAGCT
LOC_Os01g34220
OsAffx.2150.1.S1_at--826--6331Chr01:19196975..19196999 (25 bp)
GATGCATCTGATAGACCTCGGCGGC
LOC_Os01g34220
OsAffx.2150.1.S1_at--790--9131Chr01:19196890..19196914 (25 bp)
TGCTGGCCTAGGTCAGACGAGGTTT
LOC_Os01g34220
OsAffx.2150.1.S1_at--856--7851Chr01:19196870..19196894 (25 bp)
GGTTTTCAAGGCAACTAGGCCATGC
LOC_Os01g34220
OsAffx.2150.1.S1_at--606--1851Chr01:19196841..19196865 (25 bp)
ACGAATGGTTCTCACTGTACAGGAA
LOC_Os01g34220
OsAffx.2150.1.S1_at--984--8131Chr01:19196804..19196828 (25 bp)
GGAAATTCCAGTCCATGACATCGGA
LOC_Os01g34220
OsAffx.2150.1.S1_at--964--2971Chr01:19196779..19196803 (25 bp)
AATGTCATGGTAGTTCAAAGTCGTG
LOC_Os01g34220
OsAffx.2150.1.S1_at--930--2311Chr01:19196763..19196787 (25 bp)
AAAGTCGTGATTCTTGCACCCGCAC
LOC_Os01g34220
OsAffx.2150.1.S1_at--640--9871Chr01:19196737..19196761 (25 bp)
TACATGATCCCAGCAAGTCGTGACT
LOC_Os01g34220
OsAffx.2150.1.S1_at--545--1151Chr01:19196722..19196746 (25 bp)
AGTCGTGACTTTGCTGCACTCGGTA
LOC_Os01g34220
OsAffx.2150.1.S1_at--737--5791Chr01:19196662..19196686 (25 bp)
GACGCTGGTGGCTCATACAATGCAT
LOC_Os01g34220
Target Sequence 
GGGTGTCACACTACCTGAGAAAGCTTGCTGCCTATGGTGACCAGATGGAGATGCATCTGATAGACCTCGGCGGCGACAAC
GAAGACAGCGTTGTGCTACTGCAGGAGACGAAGAAGGTTGAGTTGCTTGGCGGCTGCTGGCCTAGGTCAGACGAGGTTTT
CAAGGCAACTAGGCCATGCCATCACGAATGGTTCTCACTGTACAGGAATGTTGAACAGGAGGAAATTCCAGTCCATGACA
TCGGAAATGTCATGGTAGTTCAAAGTCGTGATTCTTGCACCCGCACCTACATGATCCCAGCAAGTCGTGACTTTGCTGCA
CTCGGTAGCAGAAATGCCTTCTACTACCTCTGGAAGCAGTTCGACGCTGGTGGCTCATACAATGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2150.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis