Browse Element(s) Details


Os.7253.1.S1_at

Description gb:AK063278.1
DB_XREF= gi:32973296
TID=Os.7253.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7253 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-C07, full insert sequence.
FL= gb:AK063278.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2877011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g28740Os.47463.1.S1_x_at6/1112+16974935..16978635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28740Os.14491.2.S1_x_at4/1112+16974935..16978635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28750Os.55667.1.S1_at11/1112+16982369..16984821expressed protein
LOC_Os12g28760OsAffx.19874.1.S1_at11/1112+16993285..16993791hypothetical protein
LOC_Os12g28770Os.7253.1.S1_at11/1112+17003337..17005898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g28780OsAffx.19875.1.S1_x_at11/1112+17009604..17009849hypothetical protein
LOC_Os12g28780OsAffx.19875.1.S1_at11/1112+17009604..17009849hypothetical protein
LOC_Os12g28790OsAffx.19876.1.S1_x_at11/1112+17015285..17016043hypothetical protein
LOC_Os12g28800OsAffx.25936.1.S1_s_at9/1112+17018718..17021756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28800OsAffx.25936.7.S1_s_at8/1112+17018718..17021756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28800OsAffx.25936.2.S1_x_at4/1112+17018718..17021756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28800OsAffx.25936.5.S1_x_at2/1112+17018718..17021756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28810Os.10827.1.S1_x_at11/1112+17025151..17029849transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28810Os.46055.2.S1_x_at5/1112+17025151..17029849transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7253.1.S1_at--423--9211Chr12:17003691..17003715 (25 bp)
TCCACCGTCGATGTATTCTCGCAAA
LOC_Os12g28770
Os.7253.1.S1_at--1011--7171Chr12:17003685..17003709 (25 bp)
GTCGATGTATTCTCGCAAAGATCCG
LOC_Os12g28770
Os.7253.1.S1_at--632--2331Chr12:17003669..17003693 (25 bp)
AAAGATCCGAGCACTTGGTCGTCGT
LOC_Os12g28770
Os.7253.1.S1_at--212--5931Chr12:17003661..17003685 (25 bp)
GAGCACTTGGTCGTCGTCTTCCAAA
LOC_Os12g28770
Os.7253.1.S1_at--393--9411Chr12:17003648..17003672 (25 bp)
TCGTCTTCCAAACAGCAGCCATGAG
LOC_Os12g28770
Os.7253.1.S1_at--431--3091Chr12:17003618..17003642 (25 bp)
AATACATTTTGCTTGTGCTGGAAAT
LOC_Os12g28770
Os.7253.1.S1_at--193--231Chr12:17003536..17003560 (25 bp)
ATTTGGCTATTTGCACTCTGTATAC
LOC_Os12g28770
Os.7253.1.S1_at--261--7891Chr12:17003472..17003496 (25 bp)
GGTTAATCCTACTTTGTGACTATGA
LOC_Os12g28770
Os.7253.1.S1_at--940--2251Chr12:17003440..17003464 (25 bp)
AAATAATCGCGGCTTGTGCTCTCTC
LOC_Os12g28770
Os.7253.1.S1_at--704--9511Chr12:17003419..17003443 (25 bp)
TCTCTGTCTTCGACTGTTTGGTAGT
LOC_Os12g28770
Os.7253.1.S1_at--681--2131Chr12:17003364..17003388 (25 bp)
ACAGTGAGTCTCAACTTATGTTTTG
LOC_Os12g28770
Target Sequence 
TCCACCGTCGATGTATTCTCGCAAAGATCCGAGCACTTGGTCGTCGTCTTCCAAACAGCAGCCATGAGTAAAAAATACAT
TTTGCTTGTGCTGGAAATTGTATTGTGTACTATGTATATGAGCTTTTTTTTATGGATTGTTTAGTGTAAGAGTGCATTTG
GCTATTTGCACTCTGTATACAAATATTTGTAGATTTTAGGTTTAAAAGAATGAAGATTAGGTTAATCCTACTTTGTGACT
ATGAAAGGGTAAAATAATCGCGGCTTGTGCTCTCTCTGTCTTCGACTGTTTGGTAGTGTGGAAATTTGGCATACAGGTTA
ATATCAAACAGTGAGTCTCAACTTATGTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7253.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis