Browse Element(s) Details


Os.55667.1.S1_at

Description gb:AK108523.1
DB_XREF= gi:32993732
TID=Os.55667.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55667 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-144-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-144-B06, full insert sequence.
FL= gb:AK108523.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2875011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g28710NANA12+16957894..16959602Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g28720OsAffx.7729.1.S1_at11/1112+16960559..16964907expressed protein
LOC_Os12g28730NANA12+16969093..16972039transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28740Os.47463.1.S1_x_at6/1112+16974935..16978635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28740Os.14491.2.S1_x_at4/1112+16974935..16978635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28750Os.55667.1.S1_at11/1112+16982369..16984821expressed protein
LOC_Os12g28760OsAffx.19874.1.S1_at11/1112+16993285..16993791hypothetical protein
LOC_Os12g28770Os.7253.1.S1_at11/1112+17003337..17005898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g28780OsAffx.19875.1.S1_x_at11/1112+17009604..17009849hypothetical protein
LOC_Os12g28780OsAffx.19875.1.S1_at11/1112+17009604..17009849hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0001709biological_processcell fate determination
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55667.1.S1_at--147--9871Chr12:16984382..16984406 (25 bp)
TACACGGTGGACGTGATGAACCGGT
LOC_Os12g28750
Os.55667.1.S1_at--283--551Chr12:16984451..16984475 (25 bp)
ATCCACGTGCGGTGCGGGTGGTTCA
LOC_Os12g28750
Os.55667.1.S1_at--453--4531Chr12:16984654..16984678 (25 bp)
GCCGCCGTCAATCGCCGCAAGGAAA
LOC_Os12g28750
Os.55667.1.S1_at--544--7071Chr12:16984660..16984684 (25 bp)
GTCAATCGCCGCAAGGAAAAAGTAG
LOC_Os12g28750
Os.55667.1.S1_at--874--6931Chr12:16984713..16984737 (25 bp)
GTAGTACTAGTGACATCTCTTGCCT
LOC_Os12g28750
Os.55667.1.S1_at--513--2031Chr12:16984718..16984742 (25 bp)
ACTAGTGACATCTCTTGCCTTACTA
LOC_Os12g28750
Os.55667.1.S1_at--783--5671Chr12:16984724..16984748 (25 bp)
GACATCTCTTGCCTTACTAGTTTTT
LOC_Os12g28750
Os.55667.1.S1_at--709--10371Chr12:16984763..16984787 (25 bp)
TTTTTTGACCCCATGTCAGTATCAC
LOC_Os12g28750
Os.55667.1.S1_at--621--4171Chr12:16984772..16984796 (25 bp)
CCCATGTCAGTATCACTCACAGAAC
LOC_Os12g28750
Os.55667.1.S1_at--403--10171Chr12:16984782..16984806 (25 bp)
TATCACTCACAGAACAACAGCTCAC
LOC_Os12g28750
Os.55667.1.S1_at--1060--5491Chr12:16984793..16984817 (25 bp)
GAACAACAGCTCACCATTTGCTACG
LOC_Os12g28750
Target Sequence 
TACACGGTGGACGTGATGAACCGGTGCGCCGGCGGCGGCGGCGGCGACGAGGAGTGCGCCATCGCGGGGATCCACGTGCG
GTGCGGGTGGTTCAGCTCGGTGAGCCTGGTGGACCCGCGCGTGTTCCGCCGGCTCGGCCACGACGACTGCCTCCTCAACG
ACGGCCGCCCGCTCCTCGCCGGCGAGACCGTCTCCTTCGAGTACACCAACTCCTTCCCCTACAAGCTCTCCGTCTCCGTC
GCAACCTGCGTCGTCGACCCCGCCGCCCCATAGCCGCCGTCAATCGCCGCAAGGAAAAAGTAGACAAAACAAAAGAAACG
AAAGAGAAACAGTAGTACTAGTGACATCTCTTGCCTTACTAGTTTTTTTGTTCTTTTCTTTTTTTTTGACCCCATGTCAG
TATCACTCACAGAACAACAGCTCACCATTTGCTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55667.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis