Browse Element(s) Details


OsAffx.7729.1.S1_at

Description tigr:9640.m02765
TID=OsAffx.7729.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2872011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g28659NANA12+16935219..16935797retrotransposon protein, putative, unclassified
LOC_Os12g28670NANA12+16937370..16938023retrotransposon protein, putative, unclassified
LOC_Os12g28679NANA12+16941191..16941769retrotransposon protein, putative, unclassified
LOC_Os12g28690OsAffx.22385.1.S1_x_at4/1112+16943318..16947730retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g28690OsAffx.20329.1.S1_at2/1112+16943318..16947730retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g28700NANA12+16952779..16953606NA
LOC_Os12g28710NANA12+16957894..16959602Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g28720OsAffx.7729.1.S1_at11/1112+16960559..16964907expressed protein
LOC_Os12g28730NANA12+16969093..16972039transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28740Os.47463.1.S1_x_at6/1112+16974935..16978635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28740Os.14491.2.S1_x_at4/1112+16974935..16978635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28750Os.55667.1.S1_at11/1112+16982369..16984821expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7729.1.S1_at--314--871Chr12:16964846..16964870 (25 bp)
ATGGCCGGCCACTTTTGGTGTCCGT
LOC_Os12g28720
OsAffx.7729.1.S1_at--12--10851Chr12:16964832..16964856 (25 bp)
TTGGTGTCCGTACCCGTTGCGATGA
LOC_Os12g28720
OsAffx.7729.1.S1_at--550--6971Chr12:16964823..16964847 (25 bp)
GTACCCGTTGCGATGACCGAGTTGA
LOC_Os12g28720
OsAffx.7729.1.S1_at--422--1811Chr12:16964821..16964845 (25 bp)
ACCCGTTGCGATGACCGAGTTGAGC
LOC_Os12g28720
OsAffx.7729.1.S1_at--344--8931Chr12:16964810..16964834 (25 bp)
TGACCGAGTTGAGCCGGTCGACGAT
LOC_Os12g28720
OsAffx.7729.1.S1_at--979--10751Chr12:16964802..16964826 (25 bp)
TTGAGCCGGTCGACGATCGGCTATT
LOC_Os12g28720
OsAffx.7729.1.S1_at--666--5771Chr12:16964791..16964815 (25 bp)
GACGATCGGCTATTGGGTCGGTATC
LOC_Os12g28720
OsAffx.7729.1.S1_at--365--4051Chr12:16964789..16964813 (25 bp)
CGATCGGCTATTGGGTCGGTATCAA
LOC_Os12g28720
OsAffx.7729.1.S1_at--278--9451Chr12:16964786..16964810 (25 bp)
TCGGCTATTGGGTCGGTATCAACCA
LOC_Os12g28720
OsAffx.7729.1.S1_at--664--11Chr12:16964780..16964804 (25 bp)
ATTGGGTCGGTATCAACCAACGCTT
LOC_Os12g28720
OsAffx.7729.1.S1_at--439--7751Chr12:16964776..16964800 (25 bp)
GGTCGGTATCAACCAACGCTTTGCG
LOC_Os12g28720
Target Sequence 
ATGGCCGGCCACTTTTGGTGTCCGTACCCGTTGCGATGACCGAGTTGAGCCGGTCGACGATCGGCTATTGGGTCGGTATC
AACCAACGCTTTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7729.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis