Browse Element(s) Details


OsAffx.19874.1.S1_at

Description tigr:9640.m02769
TID=OsAffx.19874.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2876011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g28730NANA12+16969093..16972039transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28740Os.47463.1.S1_x_at6/1112+16974935..16978635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28740Os.14491.2.S1_x_at4/1112+16974935..16978635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28750Os.55667.1.S1_at11/1112+16982369..16984821expressed protein
LOC_Os12g28760OsAffx.19874.1.S1_at11/1112+16993285..16993791hypothetical protein
LOC_Os12g28770Os.7253.1.S1_at11/1112+17003337..17005898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g28780OsAffx.19875.1.S1_x_at11/1112+17009604..17009849hypothetical protein
LOC_Os12g28780OsAffx.19875.1.S1_at11/1112+17009604..17009849hypothetical protein
LOC_Os12g28790OsAffx.19876.1.S1_x_at11/1112+17015285..17016043hypothetical protein
LOC_Os12g28800OsAffx.25936.1.S1_s_at9/1112+17018718..17021756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28800OsAffx.25936.7.S1_s_at8/1112+17018718..17021756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28800OsAffx.25936.2.S1_x_at4/1112+17018718..17021756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28800OsAffx.25936.5.S1_x_at2/1112+17018718..17021756transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19874.1.S1_at--514--1831Chr12:16993323..16993347 (25 bp)
ACGCCGCCTTAGCTCTAGAGGAGGA
LOC_Os12g28760
OsAffx.19874.1.S1_at--517--7731Chr12:16993406..16993430 (25 bp)
GGTGGAGCTCGTGGCCCTCTGCCAA
LOC_Os12g28760
OsAffx.19874.1.S1_at--571--2671Chr12:16993455..16993479 (25 bp)
AAGCCCCGCGCCTAGATCTTTGTCA
LOC_Os12g28760
OsAffx.19874.1.S1_at--707--3231Chr12:16993511..16993535 (25 bp)
CAACTGCCGCCAGCAAAGGTTGCGA
LOC_Os12g28760
OsAffx.19874.1.S1_at--805--3271Chr12:16993524..16993548 (25 bp)
CAAAGGTTGCGACAAGCGAAGGACA
LOC_Os12g28760
OsAffx.19874.1.S1_at--448--6111Chr12:16993559..16993583 (25 bp)
GAGGGAACGACATTGGCTTGAAACC
LOC_Os12g28760
OsAffx.19874.1.S1_at--143--10871Chr12:16993571..16993595 (25 bp)
TTGGCTTGAAACCAGCTGATGAGCT
LOC_Os12g28760
OsAffx.19874.1.S1_at--107--8871Chr12:16993587..16993611 (25 bp)
TGATGAGCTGCTCCCCGTTGGGCTT
LOC_Os12g28760
OsAffx.19874.1.S1_at--982--10771Chr12:16993610..16993634 (25 bp)
TTGTTGCTGCCGTTGACCTGGTAGG
LOC_Os12g28760
OsAffx.19874.1.S1_at--1019--5451Chr12:16993689..16993713 (25 bp)
GAACTCTGCTTGGTCTAAATCCGGC
LOC_Os12g28760
OsAffx.19874.1.S1_at--772--3331Chr12:16993697..16993721 (25 bp)
CTTGGTCTAAATCCGGCAAGCCCAC
LOC_Os12g28760
Target Sequence 
ACGCCGCCTTAGCTCTAGAGGAGGAGGGGTAGAGCGGCCAGTGGAGTGGGATAGGGGAGCTCGAGGAGTCGTCGGCCACC
GTCGGTGGAGCTCGTGGCCCTCTGCCAAGAACTGCGCCACCACCGCTGCTCCAAGCCCCGCGCCTAGATCTTTGTCACCC
TTCTTCCACCACCGCTTCGCCCCACTAGCAACTGCCGCCAGCAAAGGTTGCGACAAGCGAAGGACAGGAGGAGGGGGAGG
GAACGACATTGGCTTGAAACCAGCTGATGAGCTGCTCCCCGTTGGGCTTGTTGCTGCCGTTGACCTGGTAGGGGGAGCTT
GTTGCTGGTGTCATTGCCGAGCTTGCTGGACCGAGCCGTCTCCTCCGAACTCTGCTTGGTCTAAATCCGGCAAGCCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19874.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis