Browse Element(s) Details


OsAffx.19877.1.S1_at

Description tigr:9640.m02775
TID=OsAffx.19877.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2882011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g28780OsAffx.19875.1.S1_x_at11/1112+17009604..17009849hypothetical protein
LOC_Os12g28780OsAffx.19875.1.S1_at11/1112+17009604..17009849hypothetical protein
LOC_Os12g28790OsAffx.19876.1.S1_x_at11/1112+17015285..17016043hypothetical protein
LOC_Os12g28800OsAffx.25936.1.S1_s_at9/1112+17018718..17021756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28800OsAffx.25936.7.S1_s_at8/1112+17018718..17021756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28800OsAffx.25936.2.S1_x_at4/1112+17018718..17021756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28800OsAffx.25936.5.S1_x_at2/1112+17018718..17021756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28810Os.10827.1.S1_x_at11/1112+17025151..17029849transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28810Os.46055.2.S1_x_at5/1112+17025151..17029849transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g28820OsAffx.19877.1.S1_at11/1112+17032066..17032857hypothetical protein
LOC_Os12g28830OsAffx.21171.4.S1_x_at3/1112+17036501..17042406retrotransposon protein, putative, unclassified
LOC_Os12g28830OsAffx.20729.1.S1_x_at1/1112+17036501..17042406retrotransposon protein, putative, unclassified
LOC_Os12g28830OsAffx.10158.1.S1_x_at1/1112+17036501..17042406retrotransposon protein, putative, unclassified
LOC_Os12g28830OsAffx.21171.5.S1_x_at1/1112+17036501..17042406retrotransposon protein, putative, unclassified
LOC_Os12g28830OsAffx.21171.4.S1_at1/1112+17036501..17042406retrotransposon protein, putative, unclassified
LOC_Os12g28840NANA12+17043737..17044306retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g28850OsAffx.22711.4.A1_x_at1/1112+17046781..17050411retrotransposon protein, putative, unclassified
LOC_Os12g28850OsAffx.22927.1.S1_x_at1/1112+17046781..17050411retrotransposon protein, putative, unclassified
LOC_Os12g28850OsAffx.20380.1.S1_x_at1/1112+17046781..17050411retrotransposon protein, putative, unclassified
LOC_Os12g28860OsAffx.31919.1.S1_at11/1112+17057083..17057523hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19877.1.S1_at--391--891Chr12:17032511..17032535 (25 bp)
AGGCCGTCGTCCGTCGAACGCAGCG
LOC_Os12g28820
OsAffx.19877.1.S1_at--915--7231Chr12:17032708..17032732 (25 bp)
GTCGCCGAGCTCACGGAGATTTCGG
LOC_Os12g28820
OsAffx.19877.1.S1_at--722--1571Chr12:17032715..17032739 (25 bp)
AGCTCACGGAGATTTCGGCGCTGGA
LOC_Os12g28820
OsAffx.19877.1.S1_at--37--1271Chr12:17032724..17032748 (25 bp)
AGATTTCGGCGCTGGAGGACATTCC
LOC_Os12g28820
OsAffx.19877.1.S1_at--36--8011Chr12:17032737..17032761 (25 bp)
GGAGGACATTCCACAGGTAGCCCGT
LOC_Os12g28820
OsAffx.19877.1.S1_at--272--91Chr12:17032744..17032768 (25 bp)
ATTCCACAGGTAGCCCGTGGCAGGA
LOC_Os12g28820
OsAffx.19877.1.S1_at--652--2111Chr12:17032749..17032773 (25 bp)
ACAGGTAGCCCGTGGCAGGAAAGAA
LOC_Os12g28820
OsAffx.19877.1.S1_at--150--1851Chr12:17032775..17032799 (25 bp)
ACGACCAACTCCTCAGGGAAGCTGA
LOC_Os12g28820
OsAffx.19877.1.S1_at--604--9251Chr12:17032784..17032808 (25 bp)
TCCTCAGGGAAGCTGATGACCGCTT
LOC_Os12g28820
OsAffx.19877.1.S1_at--434--6311Chr12:17032798..17032822 (25 bp)
GATGACCGCTTGAGAGCTGATCTTA
LOC_Os12g28820
OsAffx.19877.1.S1_at--217--4231Chr12:17032803..17032827 (25 bp)
CCGCTTGAGAGCTGATCTTACTGTG
LOC_Os12g28820
Target Sequence 
AGGCCGTCGTCCGTCGAACGCAGCGGCGGCTGCTGCTGCTGTCCGGCGCCGTCGCCGAGGAGGCCGACGTCGGCGCGGTG
GTGTCCCTCGTGGAGCGCCTCGCCCGTGCGCAGGGGGCGGAGGCGGCTCTCGCGGTGGCCATGGAGGCGATGAAGGCGCG
TCACCGGCGGCTGCTGCTGCAGCGCGAAGCTGCCGAGGTCGCCGAGCTCACGGAGATTTCGGCGCTGGAGGACATTCCAC
AGGTAGCCCGTGGCAGGAAAGAAGACGACCAACTCCTCAGGGAAGCTGATGACCGCTTGAGAGCTGATCTTACTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19877.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis