Browse Element(s) Details


OsAffx.6139.1.S1_at

Description tigr:9636.m04569
TID=OsAffx.6139.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4480011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44750Os.5091.1.S1_at11/118+27985889..27988746nodulin MtN21 family protein, putative, expressed
LOC_Os08g44760Os.52402.1.S1_at11/118+27990463..27993793expressed protein
LOC_Os08g44760Os.52402.2.S1_at11/118+27990463..27993793expressed protein
LOC_Os08g44770Os.5522.1.S1_at10/118+27999601..28002662Superoxide dismutase, chloroplast precursor, putative, expressed
LOC_Os08g44780Os.50081.1.S1_x_at11/118+28002729..28004421expressed protein
LOC_Os08g44790Os.53024.1.S1_at11/118+28004706..28005867Alpha-expansin 3 precursor, putative, expressed
LOC_Os08g44800OsAffx.6139.1.S1_at11/118+28006054..28007512hypothetical protein
LOC_Os08g44810Os.11588.1.S1_at11/118+28008211..28012039Malate dehydrogenase 1, chloroplast precursor, putative, expressed
LOC_Os08g44820Os.9354.2.S1_at11/118+28012033..28016394No apical meristem protein, expressed
LOC_Os08g44820Os.9354.1.S1_at11/118+28012033..28016394No apical meristem protein, expressed
LOC_Os08g44830Os.51657.1.S1_at11/118+28022378..28026486zinc finger family protein, putative, expressed
LOC_Os08g44830OsAffx.13726.1.S1_x_at3/118+28022378..28026486zinc finger family protein, putative, expressed
LOC_Os08g44840Os.14153.2.S1_x_at11/118+28030293..28032462Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6139.1.S1_at--300--6571Chr08:28007447..28007471 (25 bp)
GATTCACCTGTTCTTTTGTTGCCTA
LOC_Os08g44800
OsAffx.6139.1.S1_at--908--10831Chr08:28007349..28007373 (25 bp)
TTGGTGGAAACAACGTGGTGCTCCT
LOC_Os08g44800
OsAffx.6139.1.S1_at--1035--7491Chr08:28007335..28007359 (25 bp)
GTGGTGCTCCTACAAGATTTCTTCA
LOC_Os08g44800
OsAffx.6139.1.S1_at--1046--3651Chr08:28007315..28007339 (25 bp)
CTTCATGTATGAGCTGGTTGTGGAT
LOC_Os08g44800
OsAffx.6139.1.S1_at--1118--511Chr08:28007275..28007299 (25 bp)
ATCGCTGGCGAAAGCTTTTCCCTAC
LOC_Os08g44800
OsAffx.6139.1.S1_at--722--10351Chr08:28007260..28007284 (25 bp)
TTTTCCCTACCGTTAGCCAAATATG
LOC_Os08g44800
OsAffx.6139.1.S1_at--284--1331Chr08:28006181..28006205 (25 bp)
AGAGGAAGCTCAACCAGCGGTGGCT
LOC_Os08g44800
OsAffx.6139.1.S1_at--656--3391Chr08:28006167..28006191 (25 bp)
CAGCGGTGGCTGTCTCTGTCTGCAA
LOC_Os08g44800
OsAffx.6139.1.S1_at--612--9471Chr08:28006153..28006177 (25 bp)
TCTGTCTGCAAATCAGAGCGGCGGC
LOC_Os08g44800
OsAffx.6139.1.S1_at--711--4431Chr08:28006127..28006151 (25 bp)
GCCATTTCCCGTCGTGGAGATCAAA
LOC_Os08g44800
OsAffx.6139.1.S1_at--512--6451Chr08:28006109..28006133 (25 bp)
GATCAAATTTCGTAGCAAGCAGCAA
LOC_Os08g44800
Target Sequence 
GATTCACCTGTTCTTTTGTTGCCTATGTCTGCCTCCTCTTAGCTCCCTCCGGGTGCCACAACAAATGTGGCGTGATGATG
AGGAGATCCTGGCAATTATTGGTGGAAACAACGTGGTGCTCCTACAAGATTTCTTCATGTATGAGCTGGTTGTGGATGTG
GAGTGGGCAGGAATCGCTGGCGAAAGCTTTTCCCTACCGTTAGCCAAATATGACGATGGCGGGGGCAGAGCAGAGGCTGG
CCACGAAGAAGCAGCGCGCGGCGGCGTGAGGGCAAAGAGGAAGCTCAACCAGCGGTGGCTGTCTCTGTCTGCAAATCAGA
GCGGCGGCGGCCATTTCCCGTCGTGGAGATCAAATTTCGTAGCAAGCAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6139.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis