Browse Element(s) Details


Os.53024.1.S1_at

Description gb:AK070505.1
DB_XREF= gi:32980529
TID=Os.53024.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53024 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023052B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023052B04, full insert sequence.
FL= gb:AK070505.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4479011/11Alpha-expansin 3 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44740OsAffx.17515.1.S1_at11/118+27979966..27980923hypothetical protein
LOC_Os08g44750Os.5091.1.S1_at11/118+27985889..27988746nodulin MtN21 family protein, putative, expressed
LOC_Os08g44760Os.52402.1.S1_at11/118+27990463..27993793expressed protein
LOC_Os08g44760Os.52402.2.S1_at11/118+27990463..27993793expressed protein
LOC_Os08g44770Os.5522.1.S1_at10/118+27999601..28002662Superoxide dismutase, chloroplast precursor, putative, expressed
LOC_Os08g44780Os.50081.1.S1_x_at11/118+28002729..28004421expressed protein
LOC_Os08g44790Os.53024.1.S1_at11/118+28004706..28005867Alpha-expansin 3 precursor, putative, expressed
LOC_Os08g44800OsAffx.6139.1.S1_at11/118+28006054..28007512hypothetical protein
LOC_Os08g44810Os.11588.1.S1_at11/118+28008211..28012039Malate dehydrogenase 1, chloroplast precursor, putative, expressed
LOC_Os08g44820Os.9354.2.S1_at11/118+28012033..28016394No apical meristem protein, expressed
LOC_Os08g44820Os.9354.1.S1_at11/118+28012033..28016394No apical meristem protein, expressed
LOC_Os08g44830Os.51657.1.S1_at11/118+28022378..28026486zinc finger family protein, putative, expressed
LOC_Os08g44830OsAffx.13726.1.S1_x_at3/118+28022378..28026486zinc finger family protein, putative, expressed
LOC_Os08g44840Os.14153.2.S1_x_at11/118+28030293..28032462Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53024.1.S1_at--644--4451Chr08:28005225..28005249 (25 bp)
GCCTTTCTGCAGATCGCGCAGGAGA
LOC_Os08g44790
Os.53024.1.S1_at--679--8271Chr08:28005255..28005279 (25 bp)
GGCATCGTGCCCATATCGTACAGAC
LOC_Os08g44790
Os.53024.1.S1_at--921--3571Chr08:28005266..28005365 (25 bp)
CATATCGTACAGACGGGTGCCGTGT
LOC_Os08g44790
Os.53024.1.S1_at--4--6411Chr08:28005380..28005404 (25 bp)
GATCAGGTACACGATAACCGGGAAC
LOC_Os08g44790
Os.53024.1.S1_at--185--2871Chr08:28005489..28005513 (25 bp)
AAGTGGACTCCGCTGAAGCGCAACT
LOC_Os08g44790
Os.53024.1.S1_at--518--1391Chr08:28005529..28005553 (25 bp)
AGACGTCGGAGGTCCTCACCGGAGA
LOC_Os08g44790
Os.53024.1.S1_at--463--6731Chr08:28005563..28005587 (25 bp)
GTTCAGGGTGATGACCGGCGACCAC
LOC_Os08g44790
Os.53024.1.S1_at--336--9751Chr08:28005666..28005690 (25 bp)
TAATTCTTATCAATCATGCCAACCC
LOC_Os08g44790
Os.53024.1.S1_at--680--5291Chr08:28005714..28005738 (25 bp)
GAAGGCTCTCTTACATGCATGAATG
LOC_Os08g44790
Os.53024.1.S1_at--834--4751Chr08:28005738..28005762 (25 bp)
GCTGACTACTGCAAATCTGGATCGA
LOC_Os08g44790
Os.53024.1.S1_at--1013--6291Chr08:28005766..28005790 (25 bp)
GATGATGATCATACTAGCTACAAAT
LOC_Os08g44790
Target Sequence 
GCCTTTCTGCAGATCGCGCAGGAGAAGGCCGGCATCGTGCCCATATCGTACAGACGGGTGCCGTGTGTGAAGGTGGGTGG
GATCAGGTACACGATAACCGGGAACCCGTACTTCAACCTGGTGATGGTGTCGAACGTGGGCGGGGCGGGTGACGTGGCAG
GGCTATCGGTGAAGGGGAACAAGAGGGTGAAGTGGACTCCGCTGAAGCGCAACTGGGGGCAGGAGTGGCAGACGTCGGAG
GTCCTCACCGGAGAGTCGCTGACGTTCAGGGTGATGACCGGCGACCACCGCAAGGCCACCTCCTGGCACGTCCTCCCCCC
CGACTGGCAGTTCGGCGTCACCTACCAGGCTACCAAGAACTTCAACTAATTCTTATCAATCATGCCAACCCAACCCAACC
CAACAGCAAAATATGAAGGCTCTCTTACATGCATGAATGCTGACTACTGCAAATCTGGATCGAACCGATGATGATCATAC
TAGCTACAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53024.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis