Browse Element(s) Details


OsAffx.17515.1.S1_at

Description tigr:9636.m04562
TID=OsAffx.17515.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4474011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44700NANA8+27955994..27962149retrotransposon protein, putative, unclassified
LOC_Os08g44710NANA8+27962765..27966070retrotransposon protein, putative, unclassified
LOC_Os08g44720NANA8+27968634..27971367retrotransposon protein, putative, unclassified
LOC_Os08g44730OsAffx.17514.1.S1_at11/118+27978031..27978466hypothetical protein
LOC_Os08g44740OsAffx.17515.1.S1_at11/118+27979966..27980923hypothetical protein
LOC_Os08g44750Os.5091.1.S1_at11/118+27985889..27988746nodulin MtN21 family protein, putative, expressed
LOC_Os08g44760Os.52402.1.S1_at11/118+27990463..27993793expressed protein
LOC_Os08g44760Os.52402.2.S1_at11/118+27990463..27993793expressed protein
LOC_Os08g44770Os.5522.1.S1_at10/118+27999601..28002662Superoxide dismutase, chloroplast precursor, putative, expressed
LOC_Os08g44780Os.50081.1.S1_x_at11/118+28002729..28004421expressed protein
LOC_Os08g44790Os.53024.1.S1_at11/118+28004706..28005867Alpha-expansin 3 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17515.1.S1_at--50--451Chr08:27980015..27980039 (25 bp)
ATCTAGCTGCCCTGAGCGCCGGTGG
LOC_Os08g44740
OsAffx.17515.1.S1_at--319--4091Chr08:27980080..27980104 (25 bp)
CGACGACGACCGTATGGGCTTCGGC
LOC_Os08g44740
OsAffx.17515.1.S1_at--29--5031Chr08:27980116..27980140 (25 bp)
GCAGTGGCCGCAACTATTAAGGTTT
LOC_Os08g44740
OsAffx.17515.1.S1_at--580--5471Chr08:27980146..27980170 (25 bp)
GAACTAACGCTTATGAGCCGTCACC
LOC_Os08g44740
OsAffx.17515.1.S1_at--560--5851Chr08:27980160..27980184 (25 bp)
GAGCCGTCACCTATTAAGAGCAAGT
LOC_Os08g44740
OsAffx.17515.1.S1_at--20--8891Chr08:27980192..27980216 (25 bp)
TGAGCTATAACCCTACTATAAGCTT
LOC_Os08g44740
OsAffx.17515.1.S1_at--893--4771Chr08:27980482..27980506 (25 bp)
GCTGCTGATCGACATGCATATCCAA
LOC_Os08g44740
OsAffx.17515.1.S1_at--1034--4951Chr08:27980497..27980521 (25 bp)
GCATATCCAATGTGGCTCGCTCCAG
LOC_Os08g44740
OsAffx.17515.1.S1_at--1051--10651Chr08:27980526..27980550 (25 bp)
TTCCTTTGGCTCAGTTGTCAGTTGA
LOC_Os08g44740
OsAffx.17515.1.S1_at--1040--4051Chr08:27980840..27980864 (25 bp)
CGAGCAGCATGTCCCAGCAAAGCAG
LOC_Os08g44740
OsAffx.17515.1.S1_at--498--2411Chr08:27980866..27980890 (25 bp)
AAAAAGCCTGATCCGGGCACCTGGA
LOC_Os08g44740
Target Sequence 
ATCTAGCTGCCCTGAGCGCCGGTGGGAAGGGGGCGAGACGGAGAGGAGAAGGGGCGACGCCACCACGACGACGACCGTAT
GGGCTTCGGCGGTGGTGGTCAGCAGTGGCCGCAACTATTAAGGTTTTAAATGAACTAACGCTTATGAGCCGTCACCTATT
AAGAGCAAGTATAATAGTGAGCTATAACCCTACTATAAGCTTATGTGGAGGAGAGCTGCTGCTGCTGCTGATCGACATGC
ATATCCAATGTGGCTCGCTCCAGCTCCTTCCTTTGGCTCAGTTGTCAGTTGAGAGATTATTGCAGCAGAGGCGAGCAGCA
TGTCCCAGCAAAGCAGGAAAAAGCCTGATCCGGGCACCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17515.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis