Browse Element(s) Details


Os.7358.1.S1_at

Description gb:AK106155.1
DB_XREF= gi:32991364
TID=Os.7358.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7358 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-208-A04, full insert sequence.
FL= gb:AK061030.1 gb:AK119714.1 gb:AK106155.1 gb:AK099124.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3410011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34070OsAffx.19542.3.S1_x_at7/114+20442643..20446865retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34080Os.6188.1.S1_at11/114+20453054..20457991WD-40 repeat family protein, putative, expressed
LOC_Os04g34090OsAffx.14124.1.S1_at11/114+20464488..20465406hypothetical protein
LOC_Os04g34100Os.7358.1.S1_at11/114+20466314..20469793expressed protein
LOC_Os04g34110NANA4+20486664..20490976retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34120OsAffx.3992.1.S1_at11/114+20492641..20493051hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7358.1.S1_at--950--8151Chr04:20469313..20469333 (21 bp)
GGAAAGATCACCCTGATTGGCACCT
LOC_Os04g34100
Os.7358.1.S1_at--346--31Chr04:20469324..20469348 (25 bp)
ATTGGCACCTCAGGCATCTCAGGAT
LOC_Os04g34100
Os.7358.1.S1_at--824--451Chr04:20469339..20469363 (25 bp)
ATCTCAGGATCCTATGTCGAGCTAA
LOC_Os04g34100
Os.7358.1.S1_at--759--5571Chr04:20469373..20469397 (25 bp)
GAAAGTCTGCAGATCATAACCATGG
LOC_Os04g34100
Os.7358.1.S1_at--559--10471Chr04:20469462..20469486 (25 bp)
TTACTGTGTAGCTACCTTGCCAATA
LOC_Os04g34100
Os.7358.1.S1_at--523--1171Chr04:20469519..20469543 (25 bp)
AGTAATTCAGTGTGCTCCAGACCTT
LOC_Os04g34100
Os.7358.1.S1_at--258--4351Chr04:20469535..20469559 (25 bp)
CCAGACCTTCCTGCTGTAATAAGAA
LOC_Os04g34100
Os.7358.1.S1_at--351--4031Chr04:20469580..20469604 (25 bp)
CGATTTGTTTTTGCTCCAGTCATGG
LOC_Os04g34100
Os.7358.1.S1_at--150--4351Chr04:20469595..20469619 (25 bp)
CCAGTCATGGTGGTGCGTGAAGCAT
LOC_Os04g34100
Os.7358.1.S1_at--866--1231Chr04:20469628..20469652 (25 bp)
AGTTGATTCCTTGCATGAGCCGTGA
LOC_Os04g34100
Os.7358.1.S1_at--94--2691Chr04:20469664..20469688 (25 bp)
AAGCTCCTACTCTGTATGGCTCTAT
LOC_Os04g34100
Target Sequence 
GGAAAGATCACCCTGATTGGCACCTCAGGCATCTCAGGATCCTATGTCGAGCTAAGGGCATGAGGAAAGTCTGCAGATCA
TAACCATGGCAGAACATCGTTTTCTGAGGGAAGGATGCATATCAGAACAAGGTGTTCCGTTTCTCTTTTTTCTTNTTACT
GTGTAGCTACCTTGCCAATAACAAGGAGATCATCAAACAGATGTGCACTTAAAGTAATTCAGTGTGCTCCAGACCTTCCT
GCTGTAATAAGAACGTGTTTCTGGGGTTCACGTCGATTTGTTTTTGCTCCAGTCATGGTGGTGCGTGAAGCATGTAGATT
CAGTTGATTCCTTGCATGAGCCGTGAATTGTTTGTTCAAGCTCCTACTCTGTATGGCTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7358.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis