Browse Element(s) Details


OsAffx.3992.1.S1_at

Description tigr:9632.m03275
TID=OsAffx.3992.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3412011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34100Os.7358.1.S1_at11/114+20466314..20469793expressed protein
LOC_Os04g34110NANA4+20486664..20490976retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34120OsAffx.3992.1.S1_at11/114+20492641..20493051hypothetical protein
LOC_Os04g34130OsAffx.26319.1.S1_at11/114+20500825..20501776hypothetical protein
LOC_Os04g34140Os.9877.1.S1_at11/114+20503478..20505235U-box domain containing protein, expressed
LOC_Os04g34150OsAffx.14125.1.S1_at11/114+20511553..20511906hypothetical protein
LOC_Os04g34160OsAffx.3993.1.S1_at11/114+20515104..20516460hypothetical protein
LOC_Os04g34160OsAffx.25067.1.S1_at1/114+20515104..20516460hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3992.1.S1_at--616--10591Chr04:20492673..20492697 (25 bp)
TTCTCCTTTGCTCGGAACGCGCGCG
LOC_Os04g34120
OsAffx.3992.1.S1_at--542--9251Chr04:20492676..20492700 (25 bp)
TCCTTTGCTCGGAACGCGCGCGGTG
LOC_Os04g34120
OsAffx.3992.1.S1_at--1038--3991Chr04:20492758..20492782 (25 bp)
CGTCGATGGCCCTCAGGCTATACCT
LOC_Os04g34120
OsAffx.3992.1.S1_at--929--9611Chr04:20492770..20492794 (25 bp)
TCAGGCTATACCTCGACATGTCCAG
LOC_Os04g34120
OsAffx.3992.1.S1_at--144--10171Chr04:20492776..20492800 (25 bp)
TATACCTCGACATGTCCAGCGGCGG
LOC_Os04g34120
OsAffx.3992.1.S1_at--814--2111Chr04:20492785..20492809 (25 bp)
ACATGTCCAGCGGCGGCAGTGCGCT
LOC_Os04g34120
OsAffx.3992.1.S1_at--652--10031Chr04:20492826..20492850 (25 bp)
TAGTCGAGTAGGCAGAGCCCCGCGG
LOC_Os04g34120
OsAffx.3992.1.S1_at--836--7791Chr04:20492859..20492883 (25 bp)
GGTCGTAGTATATGCGGCCGTCGAG
LOC_Os04g34120
OsAffx.3992.1.S1_at--295--4251Chr04:20492876..20492900 (25 bp)
CCGTCGAGGCCGTTGAGGGAGTTGG
LOC_Os04g34120
OsAffx.3992.1.S1_at--995--5851Chr04:20492956..20492980 (25 bp)
GAGCCAGGCGGTGCCGTCATAGGAG
LOC_Os04g34120
OsAffx.3992.1.S1_at--1009--9151Chr04:20492967..20492991 (25 bp)
TGCCGTCATAGGAGCCGTTGTTGGT
LOC_Os04g34120
Target Sequence 
TTCTCCTTTGCTCGGAACGCGCGCGGTGGGGCGAGGTTGGCGCAAGCTCAATGGCGGCAGTGGGGCGGCAGACGGAGAGG
CCCGCCGTCGATGGCCCTCAGGCTATACCTCGACATGTCCAGCGGCGGCAGTGCGCTGGCGCCGGGAGGAGGGTAGTCGA
GTAGGCAGAGCCCCGCGGCGTGGTGAGGTCGTAGTATATGCGGCCGTCGAGGCCGTTGAGGGAGTTGGTGAAGGAGACGA
GGACACAGGAGAGCGCGAGCAGGGCGAGGAGGGCGGCGGTGAGGAGCCAGGCGGTGCCGTCATAGGAGCCGTTGTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3992.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis