Browse Element(s) Details


Os.9877.1.S1_at

Description gb:AK121255.1
DB_XREF= gi:37990878
TID=Os.9877.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9877 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023102B22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023102B22, full insert sequence.
FL= gb:AK121255.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3414011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34110NANA4+20486664..20490976retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34120OsAffx.3992.1.S1_at11/114+20492641..20493051hypothetical protein
LOC_Os04g34130OsAffx.26319.1.S1_at11/114+20500825..20501776hypothetical protein
LOC_Os04g34140Os.9877.1.S1_at11/114+20503478..20505235U-box domain containing protein, expressed
LOC_Os04g34150OsAffx.14125.1.S1_at11/114+20511553..20511906hypothetical protein
LOC_Os04g34160OsAffx.3993.1.S1_at11/114+20515104..20516460hypothetical protein
LOC_Os04g34160OsAffx.25067.1.S1_at1/114+20515104..20516460hypothetical protein
LOC_Os04g34170Os.25734.2.S1_a_at11/114+20520646..20522441transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g34180OsAffx.14126.1.S1_at10/114+20525809..20529890hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.9877.1.S1_at--937--9091Chr04:20504676..20504695 (20 bp)
TGCTCTGGGCGGTCTGCCACAAGTA
LOC_Os04g34140
Os.9877.1.S1_at--272--7151Chr04:20504682..20504706 (25 bp)
GTCTGCCACAAGTACAGGGACCGGC
LOC_Os04g34140
Os.9877.1.S1_at--25--4091Chr04:20504804..20504828 (25 bp)
CGAGCTGCTCAAGATTTACAAGGTG
LOC_Os04g34140
Os.9877.1.S1_at--327--4371Chr04:20504870..20504894 (25 bp)
CCACATCATGCCGTTCTGAACTGAA
LOC_Os04g34140
Os.9877.1.S1_at--170--2711Chr04:20504901..20504925 (25 bp)
AAGCTTTTGGTCAGGGCCATCATGG
LOC_Os04g34140
Os.9877.1.S1_at--876--9871Chr04:20505061..20505085 (25 bp)
TACATGTGTAGCGAGAGTTTTGATA
LOC_Os04g34140
Os.9877.1.S1_at--89--6291Chr04:20505115..20505139 (25 bp)
GATGAGTTGTTGATTCTTAAGTCCA
LOC_Os04g34140
Os.9877.1.S1_at--955--51Chr04:20505145..20505169 (25 bp)
ATTGCAATTGCGTGATCAGAAGTTC
LOC_Os04g34140
Os.9877.1.S1_at--1121--5331Chr04:20505163..20505187 (25 bp)
GAAGTTCAGAACAGCCACATGTACA
LOC_Os04g34140
Os.9877.1.S1_at--642--1691Chr04:20505175..20505199 (25 bp)
AGCCACATGTACATCTCCAAATCAT
LOC_Os04g34140
Os.9877.1.S1_at--7--2271Chr04:20505193..20505217 (25 bp)
AAATCATTCACAACTTTTGGGAACA
LOC_Os04g34140
Target Sequence
TGCTCTGGGCGGTCTGCCACAAGTACAGGGACCGGCGCGCCGCCGACGCCGCGGCGGCGTCGGAGGGCGGCCTGACTCGC
CTCCTCCTGCTGCTGCAGAGCGGGTGCTCGCCGGCGGCGAGGCAGATGGCGCTCGAGCTGCTCAAGATTTACAAGGTGAA
CGCCAAGAGCTGCCTCGCCGGCTACGACTCCAAGACCACCCACATCATGCCGTTCTGAACTGAAAAATCGAAGCTTTTGG
TCAGGGCCATCATGGAACAGNAGATCNAACCTTCGTGTTCCNGTTCTTTTCTTNTCTTTTCNTTCTTTTGTTCTTTTCTA
AATGTAATTTGATGATAGAGAAAACAGGAGGAGATCGAATTGATTTGTGGAGGGAAGAAGAAAAAAATAATCTGTACATG
TGTAGCGAGAGTTTTGATAGGAAAAGAAAAATCAATGGGAAATTAACCGATGAGTTGTTGATTCTTAAGTCCAAATAGAT
TGCAATTGCGTGATCAGAAGTTCAGAACAGCCACATGTACATCTCCAAATCATTCACAACTTTTGGGAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9877.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis