Browse Element(s) Details


OsAffx.14123.1.S1_at

Description tigr:9632.m03260
TID=OsAffx.14123.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to thioredoxin peroxidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g339709/112-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33910OsAffx.31811.4.S1_at10/114+20348560..20351603hypothetical protein
LOC_Os04g33910Os.31535.1.A1_at1/114+20348560..20351603hypothetical protein
LOC_Os04g33910OsAffx.11549.1.S1_at1/114+20348560..20351603hypothetical protein
LOC_Os04g33910OsAffx.31811.2.S1_x_at1/114+20348560..20351603hypothetical protein
LOC_Os04g33920OsAffx.26317.1.S2_at9/114+20356070..20357087protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os04g33930NANA4+20359790..20361089protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os04g33940OsAffx.14122.1.S1_at11/114+20361536..20362538expressed protein
LOC_Os04g33950Os.52509.1.S1_at11/114+20362600..20367754Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os04g33960OsAffx.3987.1.S1_at10/114+20369845..20371139hypothetical protein
LOC_Os04g33970OsAffx.14123.1.S1_at9/114+20372603..203761282-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os04g33970Os.26986.1.A1_at7/114+20372603..203761282-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os04g33970Os.46481.2.S1_x_at1/114+20372603..203761282-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os04g33980Os.56332.1.S1_at11/114+20380462..20383839transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g33990Os.49701.1.S1_at10/114+20391996..20393143Harpin-induced protein 1 containing protein, expressed
LOC_Os04g34000OsAffx.26318.1.S1_at11/114+20399726..20405837digalactosyldiacylglycerol synthase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016209molecular_functionantioxidant activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14123.1.S1_at--483--5831Chr04:20372893..20372917 (25 bp)
GACCTGCCGTTGGTCGGGAACAAGG
LOC_Os04g33970
OsAffx.14123.1.S1_at--588--7891NONE
GGTTCATCAAGTCTAAATGCATGTT
NONE
OsAffx.14123.1.S1_at--1029--7151Chr04:20373599..20373623 (25 bp)
GTCTAAATGCATGTTTGTAAGCTCT
LOC_Os04g33970
OsAffx.14123.1.S1_at--1091--4991Chr04:20373607..20373631 (25 bp)
GCATGTTTGTAAGCTCTGCAGAGAT
LOC_Os04g33970
OsAffx.14123.1.S1_at--278--1591Chr04:20373618..20373642 (25 bp)
AGCTCTGCAGAGATCACTGCTTTCA
LOC_Os04g33970
OsAffx.14123.1.S1_at--64--391Chr04:20373630..20373654 (25 bp)
ATCACTGCTTTCAGCGACAGATATG
LOC_Os04g33970
OsAffx.14123.1.S1_at--845--10311Chr04:20373638..20373662 (25 bp)
TTTCAGCGACAGATATGAGGAGTTT
LOC_Os04g33970
OsAffx.14123.1.S1_at--490--2391Chr04:20373672..20373696 (25 bp)
AATACTGAAGTTCTCGGTGTTTCGA
LOC_Os04g33970
OsAffx.14123.1.S1_at--728--5331Chr04:20373678..20373702 (25 bp)
GAAGTTCTCGGTGTTTCGATTGACA
LOC_Os04g33970
OsAffx.14123.1.S1_at--505--7431Chr04:20373688..20373785 (25 bp)
GTGTTTCGATTGACAGTGTGATTTC
LOC_Os04g33970
OsAffx.14123.1.S1_at--388--10751NONE
TTGACAGTGTGATTTCAAAGTCTTT
NONE
Target Sequence 
GACCTGCCGTTGGTCGGGAACAAGGCGCCGGACTTCGAGGCGGAGGCCATGTTCGACCAGGGGTTCATCAAGTCTAAATG
CATGTTTGTAAGCTCTGCAGAGATCACTGCTTTCAGCGACAGATATGAGGAGTTTGAGAAGATAAATACTGAAGTTCTCG
GTGTTTCGATTGACAGTGTGATTTCAAAGTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14123.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis