Browse Element(s) Details


OsAffx.26317.1.S2_at

Description gb:AK110485.1
DB_XREF= gi:32995694
TID=OsAffx.26317.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-167-B02, full insert sequence.
FL= gb:AK110485.1 gb:AK107373.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g339209/11protease inhibitor/seed storage/lipid transfer protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33870Os.55125.1.S1_at5/114+20331765..20332902uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os04g33880Os.55592.1.S1_at11/114+20338722..20340860TB2/DP1, HVA22 family protein, expressed
LOC_Os04g33890OsAffx.14119.1.S1_at11/114+20343403..20343927hypothetical protein
LOC_Os04g33900NANA4+20346703..20347257Ctr copper transporter family protein
LOC_Os04g33910OsAffx.31811.4.S1_at10/114+20348560..20351603hypothetical protein
LOC_Os04g33910Os.31535.1.A1_at1/114+20348560..20351603hypothetical protein
LOC_Os04g33910OsAffx.11549.1.S1_at1/114+20348560..20351603hypothetical protein
LOC_Os04g33910OsAffx.31811.2.S1_x_at1/114+20348560..20351603hypothetical protein
LOC_Os04g33920OsAffx.26317.1.S2_at9/114+20356070..20357087protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os04g33930NANA4+20359790..20361089protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os04g33940OsAffx.14122.1.S1_at11/114+20361536..20362538expressed protein
LOC_Os04g33950Os.52509.1.S1_at11/114+20362600..20367754Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os04g33960OsAffx.3987.1.S1_at10/114+20369845..20371139hypothetical protein
LOC_Os04g33970OsAffx.14123.1.S1_at9/114+20372603..203761282-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os04g33970Os.26986.1.A1_at7/114+20372603..203761282-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os04g33970Os.46481.2.S1_x_at1/114+20372603..203761282-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os04g33980Os.56332.1.S1_at11/114+20380462..20383839transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26317.1.S2_at--898--5091Chr04:20356395..20356419 (25 bp)
GCACGACCAGGAACGCCGGGATCAA
LOC_Os04g33920
OsAffx.26317.1.S2_at--1125--9131Chr04:20356484..20356798 (25 bp)
TGCGGAGATTACACTCTGCCATGAG
LOC_Os04g33920
OsAffx.26317.1.S2_at--601--3991Chr04:20356830..20356854 (25 bp)
CGTGTCTGTCATCCGCTTAATTTAT
LOC_Os04g33920
OsAffx.26317.1.S2_at--1013--6031Chr04:20356856..20356880 (25 bp)
GAGTTTATGTCGTGTTACTTACTAA
LOC_Os04g33920
OsAffx.26317.1.S2_at--336--2691Chr04:20356880..20356904 (25 bp)
AAGCTGTATGCTGTTGTGCGTTCGT
LOC_Os04g33920
OsAffx.26317.1.S2_at--536--9151Chr04:20356896..20356920 (25 bp)
TGCGTTCGTGCAGTTTAGTGTCAGT
LOC_Os04g33920
OsAffx.26317.1.S2_at--296--9571Chr04:20356947..20356971 (25 bp)
TCTTCCGTGGGACTTCGTGATTTCA
LOC_Os04g33920
OsAffx.26317.1.S2_at--1050--9411Chr04:20356961..20356985 (25 bp)
TCGTGATTTCAGTCCGTAGAGTTGT
LOC_Os04g33920
OsAffx.26317.1.S2_at--849--6931Chr04:20356976..20357000 (25 bp)
GTAGAGTTGTTTCTCCAAGTCCAGG
LOC_Os04g33920
OsAffx.26317.1.S2_at--54--1071NONE
AGGGATGCTGAGACGCTCCCCTGAA
NONE
OsAffx.26317.1.S2_at--785--7031Chr04:20357069..20357093 (25 bp)
GTACAACTTGGTTTGTTCATCGATT
NONE
Target Sequence 
GCACGACCAGGAACGCCGGGATCAAGCCCGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATCGCCGACCGCCCCGTC
GGCTACAAGTGCGGAGATTACACTCTGCCATGAGCAACAAAGAGTACTGCATGCAGTGCCGGTGCCGTGTCTGTCATCCG
CTTAATTTATCGAGTTTATGTCGTGTTACTTACTAAAGCTGTATGCTGTTGTGCGTTCGTGCAGTTTAGTGTCAGTGTCA
AACACCAAATAAAAGGGTTCCATCTTCCGTGGGACTTCGTGATTTCAGTCCGTAGAGTTGTTTCTCCAAGTCCAGGATAG
TGTGTACTTGATCATATTATCTCGGAGGGATGCTGAGACGCTCCCCTGAATTCTCTGAATAATAGTACAACTTGGTTTGT
TCATCGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26317.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis