Browse Element(s) Details


Os.55592.1.S1_at

Description gb:AK108378.1
DB_XREF= gi:32993587
TID=Os.55592.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55592 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-E03, full insert sequence.
FL= gb:AK108378.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3388011/11TB2/DP1, HVA22 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33860Os.5413.1.S1_at11/114+20321237..20322226B-type cyclin, putative, expressed
LOC_Os04g33870Os.55125.1.S1_at5/114+20331765..20332902uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os04g33880Os.55592.1.S1_at11/114+20338722..20340860TB2/DP1, HVA22 family protein, expressed
LOC_Os04g33890OsAffx.14119.1.S1_at11/114+20343403..20343927hypothetical protein
LOC_Os04g33900NANA4+20346703..20347257Ctr copper transporter family protein
LOC_Os04g33910OsAffx.31811.4.S1_at10/114+20348560..20351603hypothetical protein
LOC_Os04g33910Os.31535.1.A1_at1/114+20348560..20351603hypothetical protein
LOC_Os04g33910OsAffx.11549.1.S1_at1/114+20348560..20351603hypothetical protein
LOC_Os04g33910OsAffx.31811.2.S1_x_at1/114+20348560..20351603hypothetical protein
LOC_Os04g33920OsAffx.26317.1.S2_at9/114+20356070..20357087protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os04g33930NANA4+20359790..20361089protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os04g33940OsAffx.14122.1.S1_at11/114+20361536..20362538expressed protein
LOC_Os04g33950Os.52509.1.S1_at11/114+20362600..20367754Transcription factor E2F/dimerisation partner family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55592.1.S1_at--496--6491Chr04:20339610..20339634 (25 bp)
GATACCAATGTACTCTGAACTCAGA
LOC_Os04g33880
Os.55592.1.S1_at--1000--8611Chr04:20339982..20340006 (25 bp)
TGGTGATGCAGTACCAGCCCAACAT
LOC_Os04g33880
Os.55592.1.S1_at--804--9971Chr04:20340023..20340047 (25 bp)
TACCTGCGTGCCAATGCCGGCGACA
LOC_Os04g33880
Os.55592.1.S1_at--213--6251Chr04:20340106..20340130 (25 bp)
GATGGAGTACATCCGGTCCCAGACG
LOC_Os04g33880
Os.55592.1.S1_at--1161--7231Chr04:20340121..20340145 (25 bp)
GTCCCAGACGTCACGAGGCTCAAGA
LOC_Os04g33880
Os.55592.1.S1_at--192--3431Chr04:20340580..20340604 (25 bp)
CAGAGAGGTCGAGCTACGTTGATGA
LOC_Os04g33880
Os.55592.1.S1_at--620--9931Chr04:20340594..20340618 (25 bp)
TACGTTGATGATTATGTCGCCGGCG
LOC_Os04g33880
Os.55592.1.S1_at--565--4611Chr04:20340650..20340674 (25 bp)
GCGACCCCGCGACGATTACTAACGG
LOC_Os04g33880
Os.55592.1.S1_at--998--7391Chr04:20340808..20340832 (25 bp)
GTGATCACTGATCCATACTCTGGTA
LOC_Os04g33880
Os.55592.1.S1_at--475--9911Chr04:20340823..20340847 (25 bp)
TACTCTGGTATATATAGCTCCTCAC
LOC_Os04g33880
Os.55592.1.S1_at--13--311Chr04:20340836..20340860 (25 bp)
ATAGCTCCTCACAATTTGGCGTTGC
LOC_Os04g33880
Target Sequence 
GATACCAATGTACTCTGAACTCAGACTCGCCTTCCTCGTCTACCTGTGGTACCCCCAGACAAGGGGAACTGACATCGTGT
ACGACACCTTCCTGCGGCCGCTGGTGATGCAGTACCAGCCCAACATCGAGGAGCGGCTGCGCTACCTGCGTGCCAATGCC
GGCGACATTCTCATCTTCTACCTCAAGAACTTCACCGATAGGGGCTACGATCTCTTCCTCCGGGGGATGGAGTACATCCG
GTCCCAGACGTCACGAGGCTCAAGAACGAGGCGGTGGTTCTCGTTCGGAGGCGACCGGGCAGAGAGGTCGAGCTACGTTG
ATGATTATGTCGCCGGCGGTGGCGATCGGAGGAGCACGGCGAGGCACCGGCGACCCCGCGACGATTACTAACGGGCTGGA
NCGGNGCCATAGGGATTCAGTAGAGAGAGGTGCACAGGATTGGAAANNANNNNATTAGGAGTGACAAAATTTAAAAGGCC
CAAAGCAAAACTTCTCAAAAACATGATGTGTATATATATATAGACAGGTGATCACTGATCCATACTCTGGTATATATAGC
TCCTCACAATTTGGCGTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55592.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis