Browse Element(s) Details


Os.55125.1.S1_at

Description gb:AK107530.1
DB_XREF= gi:32992739
TID=Os.55125.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55125 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-G09, full insert sequence.
FL= gb:AK107530.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g338705/11uncharacterized plant-specific domain TIGR01568 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33830Os.12295.1.S1_at11/114+20308587..2030965316kDa membrane protein, putative, expressed
LOC_Os04g33840OsAffx.26314.1.S1_at11/114+20312033..20313670pentatricopeptide, putative
LOC_Os04g33860Os.5413.1.S1_at11/114+20321237..20322226B-type cyclin, putative, expressed
LOC_Os04g33870Os.55125.1.S1_at5/114+20331765..20332902uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os04g33880Os.55592.1.S1_at11/114+20338722..20340860TB2/DP1, HVA22 family protein, expressed
LOC_Os04g33890OsAffx.14119.1.S1_at11/114+20343403..20343927hypothetical protein
LOC_Os04g33900NANA4+20346703..20347257Ctr copper transporter family protein
LOC_Os04g33910OsAffx.31811.4.S1_at10/114+20348560..20351603hypothetical protein
LOC_Os04g33910Os.31535.1.A1_at1/114+20348560..20351603hypothetical protein
LOC_Os04g33910OsAffx.11549.1.S1_at1/114+20348560..20351603hypothetical protein
LOC_Os04g33910OsAffx.31811.2.S1_x_at1/114+20348560..20351603hypothetical protein
LOC_Os04g33920OsAffx.26317.1.S2_at9/114+20356070..20357087protease inhibitor/seed storage/lipid transfer protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55125.1.S1_at--431--691Chr04:20332555..20332579 (25 bp)
ATGACCACGCCGCAGACCGGCAAGA
LOC_Os04g33870
Os.55125.1.S1_at--198--9931Chr04:20332654..20332678 (25 bp)
TACGGCGACTTCAGGTCGTCGATGG
LOC_Os04g33870
Os.55125.1.S1_at--911--9271Chr04:20332730..20332754 (25 bp)
TCCTGGCGTGGTACCTCAAGCTGAA
LOC_Os04g33870
Os.55125.1.S1_at--441--1611Chr04:20332748..20332772 (25 bp)
AGCTGAACGCCAAGGGCGTCCATGG
LOC_Os04g33870
Os.55125.1.S1_at--133--10551Chr04:20332789..20332813 (25 bp)
TTCATCGACATGCTCGTGAGCCTCG
LOC_Os04g33870
Os.55125.1.S1_at--569--4811Chr04:20332898..20332922 (25 bp)
GCTAATTAAGCTGTTCTCGAGGAAG
NONE
Os.55125.1.S1_at--40--8791Chr04:20332938..20332962 (25 bp)
TGTTTTTCTTTAGCCTCATCAAGAG
NONE
Os.55125.1.S1_at--420--6031Chr04:20332960..20332984 (25 bp)
GAGATGACAATCTCTTTTTCTCTTT
NONE
Os.55125.1.S1_at--261--7711Chr04:20332989..20333013 (25 bp)
GGGTGCTAATTCTTTTGTGTTTCCA
NONE
Os.55125.1.S1_at--215--7431Chr04:20333005..20333029 (25 bp)
GTGTTTCCACGAAGGAATGGCAAGT
NONE
Os.55125.1.S1_at--515--10491Chr04:20333097..20333121 (25 bp)
TTAATGCTGAGATGGCTAATTGATC
NONE
Target Sequence 
ATGACCACGCCGCAGACCGGCAAGAACGAAGCGGAAGCGGCGGAGGCCGCCGCGCTGAAGGGCGGCGCGGTGGTGCTGAC
GGTGGAGTCGGAGGACCCCTACGGCGACTTCAGGTCGTCGATGGCGGACATGGTGGCGGCGCACGGGCTGCGGGACTGGG
AGGGCCTGGAGGAGCTCCTGGCGTGGTACCTCAAGCTGAACGCCAAGGGCGTCCATGGCGTCATCGTGGGGGCCTTCATC
GACATGCTCGTGAGCCTCGCGTCCTCGCCGATCCCGTCGCAGTCGCCCTCGTCGTCGTGCATCACCTTCGAGGACTACTC
GTCGGCGACCATGGAGGAGGAGAGCTAATTAAGCTGTTCTCGAGGAAGACGACGACCACGTTTTGTTTTTCTTTAGCCTC
ATCAAGAGATGACAATCTCTTTTTCTCTTTTTTTGGGTGCTAATTCTTTTGTGTTTCCACGAAGGAATGGCAAGTGAGGG
AATTATTGTACAGTTGCTAAAAACTAATTGATGCTGATCATTAGTGTAGATTAATTAATTAATTAATGCTGAGATGGCTA
ATTGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55125.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis