Browse Element(s) Details


OsAffx.26314.1.S1_at

Description tigr:9632.m03247
TID=OsAffx.26314.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3384011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33800NANA4+20283019..20287460retrotransposon protein, putative, unclassified
LOC_Os04g33810OsAffx.14118.1.S1_at10/114+20296817..20297859RNA recognition motif family protein, expressed
LOC_Os04g33820Os.6314.1.S1_at7/114+20298484..20299680F-box domain containing protein, expressed
LOC_Os04g33830Os.12295.1.S1_at11/114+20308587..2030965316kDa membrane protein, putative, expressed
LOC_Os04g33840OsAffx.26314.1.S1_at11/114+20312033..20313670pentatricopeptide, putative
LOC_Os04g33860Os.5413.1.S1_at11/114+20321237..20322226B-type cyclin, putative, expressed
LOC_Os04g33870Os.55125.1.S1_at5/114+20331765..20332902uncharacterized plant-specific domain TIGR01568 family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26314.1.S1_at--1111--5891Chr04:20313090..20313114 (25 bp)
GAGCTACTCTTTTGTTTGAATCTAT
LOC_Os04g33840
OsAffx.26314.1.S1_at--660--2891Chr04:20313153..20313177 (25 bp)
AAGGTCATTGCCTCCATGGTTCAGC
LOC_Os04g33840
OsAffx.26314.1.S1_at--1031--2931Chr04:20313182..20313206 (25 bp)
AAGGCTGTAGAGCTTTTTTCTCAGA
LOC_Os04g33840
OsAffx.26314.1.S1_at--238--10311Chr04:20313198..20313222 (25 bp)
TTTCTCAGATGCTCTTGGAGGGCAT
LOC_Os04g33840
OsAffx.26314.1.S1_at--799--10851Chr04:20313212..20313236 (25 bp)
TTGGAGGGCATCACCCCAGATAACG
LOC_Os04g33840
OsAffx.26314.1.S1_at--448--2611Chr04:20313233..20313257 (25 bp)
AACGCCGCGTTCACAGTTGTTTTGA
LOC_Os04g33840
OsAffx.26314.1.S1_at--901--6591Chr04:20313328..20313352 (25 bp)
GATTGTACCATCTGGTGACCACTAT
LOC_Os04g33840
OsAffx.26314.1.S1_at--96--8931Chr04:20313343..20313367 (25 bp)
TGACCACTATGCTTGCCTTGTCAGT
LOC_Os04g33840
OsAffx.26314.1.S1_at--618--9631Chr04:20313363..20313387 (25 bp)
TCAGTCTTCTCGGACGTTTTGGGAT
LOC_Os04g33840
OsAffx.26314.1.S1_at--809--5911Chr04:20313404..20313428 (25 bp)
GAGCTTATCAAGTCAATGCCTGGAG
LOC_Os04g33840
OsAffx.26314.1.S1_at--996--4711Chr04:20313539..20313563 (25 bp)
GCTGGAAATTATGTCTCGTTGTCAA
LOC_Os04g33840
Target Sequence 
GAGCTACTCTTTTGTTTGAATCTATGTCAGTTCGAGATGTTTTTTCATATTGTTCAATGATGCAAGGTCATTGCCTCCAT
GGTTCAGCTAGCAAGGCTGTAGAGCTTTTTTCTCAGATGCTCTTGGAGGGCATCACCCCAGATAACGCCGCGTTCACAGT
TGTTTTGACAGCTTGCAGTCATGCTGGCCTAGTTGAAGAAGGGAAAAGGTACTTTGATATGATGAAGAATGAGTATATGA
TTGTACCATCTGGTGACCACTATGCTTGCCTTGTCAGTCTTCTCGGACGTTTTGGGATGCTGAGAGATGCATATGAGCTT
ATCAAGTCAATGCCTGGAGAACCTCATCCAGGAGCATGGGGTGCATTGCTGGGGGGATGCAAGTTTCATTGTGACATTGA
GCTTGGAAAAATTGCTGCAAAGAAGCTCTTTGAAATTGAACCGGAAAATGCTGGAAATTATGTCTCGTTGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26314.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis