Browse Element(s) Details


Os.6314.1.S1_at

Description gb:AK121479.1
DB_XREF= gi:37991102
TID=Os.6314.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6314 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023149I19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023149I19, full insert sequence.
FL= gb:AK121479.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g338207/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33780Os.8592.1.S1_at11/114+20270572..20275725OTU-like cysteine protease family protein, putative, expressed
LOC_Os04g33790OsAffx.14117.1.S1_at10/114+20278820..20281888hypothetical protein
LOC_Os04g33800NANA4+20283019..20287460retrotransposon protein, putative, unclassified
LOC_Os04g33810OsAffx.14118.1.S1_at10/114+20296817..20297859RNA recognition motif family protein, expressed
LOC_Os04g33820Os.6314.1.S1_at7/114+20298484..20299680F-box domain containing protein, expressed
LOC_Os04g33830Os.12295.1.S1_at11/114+20308587..2030965316kDa membrane protein, putative, expressed
LOC_Os04g33840OsAffx.26314.1.S1_at11/114+20312033..20313670pentatricopeptide, putative
LOC_Os04g33860Os.5413.1.S1_at11/114+20321237..20322226B-type cyclin, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6314.1.S1_at--96--10531Chr04:20298649..20298673 (25 bp)
TTCATCAGTGTACAAATCGAGCAGA
LOC_Os04g33820
Os.6314.1.S1_at--263--5971Chr04:20298626..20298650 (25 bp)
GAGAACTCGCGTGTATTTTTCTTCC
LOC_Os04g33820
Os.6314.1.S1_at--273--3551Chr04:20298613..20298637 (25 bp)
TATTTTTCTTCCACCGTAGTTACAT
LOC_Os04g33820
Os.6314.1.S1_at--768--2431Chr04:20298573..20298597 (25 bp)
AAAATTGGCCAGGTGCTTATCATCC
LOC_Os04g33820
Os.6314.1.S1_at--145--4432Chr08:1509015..1509468 (25 bp)
GCCAGGTGCTTATCATCCATTTAAA
NONE
Os.6314.1.S1_at--855--2411Chr04:20298532..20298556 (25 bp)
AAAACACCTGAGCTGATCCTAGGAT
LOC_Os04g33820
Os.6314.1.S1_at--747--7991Chr04:20298511..20298535 (25 bp)
GGATGTGACATTAAGCCTAGTAGAA
LOC_Os04g33820
Os.6314.1.S1_at--145--5691Chr04:20298484..20298508 (25 bp)
GACATTGTTCGCATGTTCCAATCTC
NONE
Os.6314.1.S1_at--665--6691Chr04:20298470..20298494 (25 bp)
GTTCCAATCTCATGTAGTAGTGCTT
NONE
Os.6314.1.S1_at--127--10051Chr04:20298456..20298480 (25 bp)
TAGTAGTGCTTTTTTACGTTTCAAT
NONE
Os.6314.1.S1_at--1042--6071Chr04:20298419..20298443 (25 bp)
GAGTAATGTTTTCCCTTCAAATAAT
NONE
Target Sequence 
TTCATCAGTGTACAAATCGAGCAGAGAACTCGCGTGTATTTTTCTTCCACCGTAGTTACATTATTCTTAAACTATAAAAA
TTGGCCAGGTGCTTATCATCCATTTAAAATAGGAGATAAAACACCTGAGCTGATCCTAGGATGTGACATTAAGCCTAGTA
GAATTGACATTGTTCGCATGTTCCAATCTCATGTAGTAGTGCTTTTTTACGTTTCAATTTGAAAAAGAAAGAGTAATGTT
TTCCCTTCAAATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6314.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis