Browse Element(s) Details


OsAffx.14118.1.S1_at

Description tigr:9632.m03244
TID=OsAffx.14118.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3381010/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33780Os.8592.1.S1_at11/114+20270572..20275725OTU-like cysteine protease family protein, putative, expressed
LOC_Os04g33790OsAffx.14117.1.S1_at10/114+20278820..20281888hypothetical protein
LOC_Os04g33800NANA4+20283019..20287460retrotransposon protein, putative, unclassified
LOC_Os04g33810OsAffx.14118.1.S1_at10/114+20296817..20297859RNA recognition motif family protein, expressed
LOC_Os04g33820Os.6314.1.S1_at7/114+20298484..20299680F-box domain containing protein, expressed
LOC_Os04g33830Os.12295.1.S1_at11/114+20308587..2030965316kDa membrane protein, putative, expressed
LOC_Os04g33840OsAffx.26314.1.S1_at11/114+20312033..20313670pentatricopeptide, putative
LOC_Os04g33860Os.5413.1.S1_at11/114+20321237..20322226B-type cyclin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14118.1.S1_at--913--371Chr04:20296934..20296958 (25 bp)
ATCACCTACAGGCTCTTCATCGGAG
LOC_Os04g33810
OsAffx.14118.1.S1_at--905--471Chr04:20296952..20297210 (25 bp)
ATCGGAGGGCTGTCCCAATTCGCGA
LOC_Os04g33810
OsAffx.14118.1.S1_at--376--3151Chr04:20297202..20297226 (25 bp)
AATTCGCGACCGAGGATAGCCTGGC
LOC_Os04g33810
OsAffx.14118.1.S1_at--278--311Chr04:20297217..20297241 (25 bp)
ATAGCCTGGCAGAAGCTTTCTCTCA
LOC_Os04g33810
OsAffx.14118.1.S1_at--1053--1551Chr04:20297230..20297254 (25 bp)
AGCTTTCTCTCAGTATGGCCAGGTA
LOC_Os04g33810
OsAffx.14118.1.S1_at--1060--5371NONE
GAAGCAACAATTGTCACCGATAAGA
NONE
OsAffx.14118.1.S1_at--147--1791Chr04:20297375..20297399 (25 bp)
ACCGATAAGATGACCAACAGACCAA
LOC_Os04g33810
OsAffx.14118.1.S1_at--68--2151Chr04:20297391..20297415 (25 bp)
ACAGACCAAAAGGATTCGGCTTTGT
LOC_Os04g33810
OsAffx.14118.1.S1_at--212--8311Chr04:20297408..20297432 (25 bp)
GGCTTTGTGAAATTTGCCTCCGAAG
LOC_Os04g33810
OsAffx.14118.1.S1_at--474--8951Chr04:20297415..20297439 (25 bp)
TGAAATTTGCCTCCGAAGAAGCCGC
LOC_Os04g33810
OsAffx.14118.1.S1_at--119--1351Chr04:20297455..20297479 (25 bp)
AGAGATGAACGGCAAGGCAAGCTTT
LOC_Os04g33810
Target Sequence 
ATCACCTACAGGCTCTTCATCGGAGGGCTGTCCCAATTCGCGACCGAGGATAGCCTGGCAGAAGCTTTCTCTCAGTATGG
CCAGGTACTAGAAGCAACAATTGTCACCGATAAGATGACCAACAGACCAAAAGGATTCGGCTTTGTGAAATTTGCCTCCG
AAGAAGCCGCCAATAAAGCAAAGGAAGAGATGAACGGCAAGGCAAGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14118.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis