Browse Element(s) Details


Os.12295.1.S1_at

Description gb:AK058848.1
DB_XREF= gi:32968866
TID=Os.12295.1
CNT=111
FEA=FLmRNA
TIER=FL+Stack
STK=27
UG=Os.12295 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-004-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-004-G12, full insert sequence.
FL= gb:AK058848.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3383011/1116kDa membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33800NANA4+20283019..20287460retrotransposon protein, putative, unclassified
LOC_Os04g33810OsAffx.14118.1.S1_at10/114+20296817..20297859RNA recognition motif family protein, expressed
LOC_Os04g33820Os.6314.1.S1_at7/114+20298484..20299680F-box domain containing protein, expressed
LOC_Os04g33830Os.12295.1.S1_at11/114+20308587..2030965316kDa membrane protein, putative, expressed
LOC_Os04g33840OsAffx.26314.1.S1_at11/114+20312033..20313670pentatricopeptide, putative
LOC_Os04g33860Os.5413.1.S1_at11/114+20321237..20322226B-type cyclin, putative, expressed
LOC_Os04g33870Os.55125.1.S1_at5/114+20331765..20332902uncharacterized plant-specific domain TIGR01568 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12295.1.S1_at--196--1331Chr04:20308946..20308970 (25 bp)
AGAGGAACGGCAGGATCACCTGCAT
LOC_Os04g33830
Os.12295.1.S1_at--981--3471Chr04:20308956..20309088 (25 bp)
CAGGATCACCTGCATGACGTTTCCG
LOC_Os04g33830
Os.12295.1.S1_at--440--491Chr04:20309093..20309117 (25 bp)
ACTGGCTTAGGAGGGACCTGAACGT
LOC_Os04g33830
Os.12295.1.S1_at--794--1711Chr04:20309108..20309132 (25 bp)
ACCTGAACGTGATCGGGTTCGGGCT
LOC_Os04g33830
Os.12295.1.S1_at--636--3951Chr04:20309121..20309145 (25 bp)
CGGGTTCGGGCTGATCGGGTGGATC
LOC_Os04g33830
Os.12295.1.S1_at--1067--3651Chr04:20309490..20309514 (25 bp)
CTTTTGGTTAGCTTGACTGTACGGA
LOC_Os04g33830
Os.12295.1.S1_at--258--7831Chr04:20309495..20309519 (25 bp)
GGTTAGCTTGACTGTACGGACGGAT
LOC_Os04g33830
Os.12295.1.S1_at--281--9931Chr04:20309509..20309533 (25 bp)
TACGGACGGATGTGTGCGCTGCATA
LOC_Os04g33830
Os.12295.1.S1_at--691--4291Chr04:20309565..20309589 (25 bp)
CCTCTTGCGGATGTACGCTGTTGTA
LOC_Os04g33830
Os.12295.1.S1_at--588--8751Chr04:20309576..20309600 (25 bp)
TGTACGCTGTTGTAATTCTCCTCAA
LOC_Os04g33830
Os.12295.1.S1_at--95--4691Chr04:20309581..20309605 (25 bp)
GCTGTTGTAATTCTCCTCAACTCCT
LOC_Os04g33830
Target Sequence 
AGAGGAACGGCAGGATCACCTGCATGACGTTTCCGCNAGGACTGGCTTAGGAGGGACCTGAACGTGATCGGGTTCGGGCT
GATCGGGTGGATCGCGCCGTCGAGCGTCCCGGCGATCAACGGCAACAGCCTCACGGGGCTCTTCTTCTCCAGCATCGGCC
AGGAGCTCTCCCACTTCCCCTCGCCGCCGGCGCTCGACTCGCCGTTCTGGCTGTGGTTGGTGACGTGGCACCTTGGGCTG
TTCCTGGCGCTCACCTTCGGCCAGATCGGGTTCAAGGGCAGGACCGAGGGCTACTTCGACAAGTGAATGAATCCACAGTG
GCTTTTGGTTAGCTTGACTGTACGGACGGATGTGTGCGCTGCATATCCTTCCTTTTGTATAGGGCTCTGATTTGATCCTC
TTGCGGATGTACGCTGTTGTAATTCTCCTCAACTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12295.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis