Browse Element(s) Details


Os.5413.1.S1_at

Description gb:AK108662.1
DB_XREF= gi:32993871
TID=Os.5413.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5413 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-F04, full insert sequence.
FL= gb:AK108662.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3386011/11B-type cyclin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33810OsAffx.14118.1.S1_at10/114+20296817..20297859RNA recognition motif family protein, expressed
LOC_Os04g33820Os.6314.1.S1_at7/114+20298484..20299680F-box domain containing protein, expressed
LOC_Os04g33830Os.12295.1.S1_at11/114+20308587..2030965316kDa membrane protein, putative, expressed
LOC_Os04g33840OsAffx.26314.1.S1_at11/114+20312033..20313670pentatricopeptide, putative
LOC_Os04g33860Os.5413.1.S1_at11/114+20321237..20322226B-type cyclin, putative, expressed
LOC_Os04g33870Os.55125.1.S1_at5/114+20331765..20332902uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os04g33880Os.55592.1.S1_at11/114+20338722..20340860TB2/DP1, HVA22 family protein, expressed
LOC_Os04g33890OsAffx.14119.1.S1_at11/114+20343403..20343927hypothetical protein
LOC_Os04g33900NANA4+20346703..20347257Ctr copper transporter family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5413.1.S1_at--843--711Chr04:20321710..20321734 (25 bp)
ATGATCCGCGGTGCCCGCAGTGCAA
LOC_Os04g33860
Os.5413.1.S1_at--423--5171Chr04:20321731..20321755 (25 bp)
GCAAGAGCCCCGTGATCCTTGACTT
LOC_Os04g33860
Os.5413.1.S1_at--342--10671Chr04:20321754..20321778 (25 bp)
TTCCTGCAGCAGGACAACGGCAACA
LOC_Os04g33860
Os.5413.1.S1_at--521--7611Chr04:20321839..20321863 (25 bp)
GGGCAATTCTCCGTTTGGCAGAAGA
LOC_Os04g33860
Os.5413.1.S1_at--591--2671Chr04:20321887..20321911 (25 bp)
AAGCGTCTATATGAAGTCCTAGGTC
LOC_Os04g33860
Os.5413.1.S1_at--237--7251Chr04:20321902..20321926 (25 bp)
GTCCTAGGTCCAGTAATTCTCTTTT
LOC_Os04g33860
Os.5413.1.S1_at--993--9731Chr04:20321915..20321939 (25 bp)
TAATTCTCTTTTGTTTTGCCTATTC
LOC_Os04g33860
Os.5413.1.S1_at--925--5511Chr04:20321989..20322013 (25 bp)
GAAAATCCATGTGCTGGTGGCATAA
LOC_Os04g33860
Os.5413.1.S1_at--1073--8471Chr04:20322062..20322086 (25 bp)
TGGCTTCCTTCTTTAGTGGTTCTAA
LOC_Os04g33860
Os.5413.1.S1_at--218--2831Chr04:20322093..20322117 (25 bp)
AAGTTTTGCTTAGACATAGGACCAG
LOC_Os04g33860
Os.5413.1.S1_at--25--291Chr04:20322108..20322132 (25 bp)
ATAGGACCAGACTTCTCATCTTTGT
LOC_Os04g33860
Target Sequence 
ATGATCCGCGGTGCCCGCAGTGCAAGAGCCCCGTGATCCTTGACTTCCTGCAGCAGGACAACGGCAACAACAACGCCAAC
AGCAATAGCAGCAGGAAGACCAGGAGAGGGTGAAGTTAAACAAAAGGGGGGGCAATTCTCCGTTTGGCAGAAGATCAACA
TCAATCAAGAAAAAGAAAAGCGTCTATATGAAGTCCTAGGTCCAGTAATTCTCTTTTGTTTTGCCTATTCCCCCAGTGTA
ACCATGATATATTCCTTACTAAAATTGTGAGACTAGCATGAAAATCCATGTGCTGGTGGCATAATTTTGATACATCATGG
ATACACTGGGGACTATATCCATCCCCCNTCTCCTGGCTTCCTTCTTTAGTGGTTCTAAATGAAGAAGTTTTGCTTAGACA
TAGGACCAGACTTCTCATCTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5413.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis