Browse Element(s) Details


Os.52509.1.S1_at

Description gb:AK067581.1
DB_XREF= gi:32977599
TID=Os.52509.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52509 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013113N12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013113N12, full insert sequence.
FL= gb:AK067581.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3395011/11Transcription factor E2F/dimerisation partner family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33880Os.55592.1.S1_at11/114+20338722..20340860TB2/DP1, HVA22 family protein, expressed
LOC_Os04g33890OsAffx.14119.1.S1_at11/114+20343403..20343927hypothetical protein
LOC_Os04g33900NANA4+20346703..20347257Ctr copper transporter family protein
LOC_Os04g33910OsAffx.31811.4.S1_at10/114+20348560..20351603hypothetical protein
LOC_Os04g33910Os.31535.1.A1_at1/114+20348560..20351603hypothetical protein
LOC_Os04g33910OsAffx.11549.1.S1_at1/114+20348560..20351603hypothetical protein
LOC_Os04g33910OsAffx.31811.2.S1_x_at1/114+20348560..20351603hypothetical protein
LOC_Os04g33920OsAffx.26317.1.S2_at9/114+20356070..20357087protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os04g33930NANA4+20359790..20361089protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os04g33940OsAffx.14122.1.S1_at11/114+20361536..20362538expressed protein
LOC_Os04g33950Os.52509.1.S1_at11/114+20362600..20367754Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os04g33960OsAffx.3987.1.S1_at10/114+20369845..20371139hypothetical protein
LOC_Os04g33970OsAffx.14123.1.S1_at9/114+20372603..203761282-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os04g33970Os.26986.1.A1_at7/114+20372603..203761282-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os04g33970Os.46481.2.S1_x_at1/114+20372603..203761282-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os04g33980Os.56332.1.S1_at11/114+20380462..20383839transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g33990Os.49701.1.S1_at10/114+20391996..20393143Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0051302biological_processregulation of cell division
GO:0005667cellular_componenttranscription factor complex
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52509.1.S1_at--669--10751Chr04:20363139..20363163 (25 bp)
TTGACACCAACGACTTCTTAGCTGA
LOC_Os04g33950
Os.52509.1.S1_at--51--9491Chr04:20363077..20363101 (25 bp)
TCTGCTGCAGCCAGTGAACCTACAG
LOC_Os04g33950
Os.52509.1.S1_at--123--2131Chr04:20363056..20363080 (25 bp)
ACAGGCGTGGGCTTCAACCATGGAT
LOC_Os04g33950
Os.52509.1.S1_at--530--10111Chr04:20362975..20362999 (25 bp)
TATGACTTAATTCCTCCGGTGGTTT
LOC_Os04g33950
Os.52509.1.S1_at--527--7731Chr04:20362958..20362982 (25 bp)
GGTGGTTTCCATGGGAGTCTGCATC
LOC_Os04g33950
Os.52509.1.S1_at--787--231Chr04:20362832..20362856 (25 bp)
ATATTTGCTTATCACTCCACTTATG
LOC_Os04g33950
Os.52509.1.S1_at--354--10431Chr04:20362812..20362836 (25 bp)
TTATGATTTGATTACCCTCCTGTTC
LOC_Os04g33950
Os.52509.1.S1_at--140--10051Chr04:20362762..20362786 (25 bp)
TAGAGGCGTTGCTTCGTTGTGTTAT
LOC_Os04g33950
Os.52509.1.S1_at--134--10371Chr04:20362737..20362761 (25 bp)
TTTTATAGCTCACTCAGGTTCTTTC
LOC_Os04g33950
Os.52509.1.S1_at--586--10311Chr04:20362716..20362740 (25 bp)
TTTCTCCCAGCTTAAGCTACTTGGT
LOC_Os04g33950
Os.52509.1.S1_at--783--5951Chr04:20362649..20362673 (25 bp)
GAGCAACCATTGTTCTATGCAAGTT
LOC_Os04g33950
Target Sequence 
TTGACACCAACGACTTCTTAGCTGAAGAAATAAGTGACACCCCATGTGCACTCAACCAGCCGTCTGCTGCAGCCAGTGAA
CCTACAGGCGTGGGCTTCAACCATGGATAACCAGTAAGGTTTACTGCTAGACCAGATCTACTGGTGTCGATTGAGGTTAT
TCGGTATGACTTAATTCCTCCGGTGGTTTCCATGGGAGTCTGCATCCTTTCCCAGAGAACAGGAAGTGCAGGCGCAGCGT
GAAGATGTACATACTGAGATAGTCAGATAGCCATTTTTTTCTGGATTGGCGGTATGGATCTGAAAACATATTTGCTTATC
ACTCCACTTATGATTTGATTACCCTCCTGTTCCAATGGTGATCGATATGATTGTACATAGAGGCGTTGCTTCGTTGTGTT
ATTTTTATAGCTCACTCAGGTTCTTTCTCCCAGCTTAAGCTACTTGGTAGGGTCAGTCTGTAAATAGTTCGACTAGGGTG
TACAGCATATGAGCAACCATTGTTCTATGCAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52509.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis