Browse Element(s) Details


OsAffx.3987.1.S1_at

Description tigr:9632.m03259
TID=OsAffx.3987.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3396010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33900NANA4+20346703..20347257Ctr copper transporter family protein
LOC_Os04g33910OsAffx.31811.4.S1_at10/114+20348560..20351603hypothetical protein
LOC_Os04g33910Os.31535.1.A1_at1/114+20348560..20351603hypothetical protein
LOC_Os04g33910OsAffx.11549.1.S1_at1/114+20348560..20351603hypothetical protein
LOC_Os04g33910OsAffx.31811.2.S1_x_at1/114+20348560..20351603hypothetical protein
LOC_Os04g33920OsAffx.26317.1.S2_at9/114+20356070..20357087protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os04g33930NANA4+20359790..20361089protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os04g33940OsAffx.14122.1.S1_at11/114+20361536..20362538expressed protein
LOC_Os04g33950Os.52509.1.S1_at11/114+20362600..20367754Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os04g33960OsAffx.3987.1.S1_at10/114+20369845..20371139hypothetical protein
LOC_Os04g33970OsAffx.14123.1.S1_at9/114+20372603..203761282-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os04g33970Os.26986.1.A1_at7/114+20372603..203761282-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os04g33970Os.46481.2.S1_x_at1/114+20372603..203761282-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os04g33980Os.56332.1.S1_at11/114+20380462..20383839transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g33990Os.49701.1.S1_at10/114+20391996..20393143Harpin-induced protein 1 containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3987.1.S1_at--1049--2991NONE
AATGATGTGAAATGTCTAACCCCTC
NONE
OsAffx.3987.1.S1_at--80--791Chr04:20370710..20370730 (21 bp)
ATGTGAAATGTCTAACCCCTCATCT
LOC_Os04g33960
OsAffx.3987.1.S1_at--46--8971Chr04:20370710..20370733 (24 bp)
TGAAATGTCTAACCCCTCATCTGTT
LOC_Os04g33960
OsAffx.3987.1.S1_at--887--3711Chr04:20370717..20370741 (25 bp)
CTAACCCCTCATCTGTTCAAAATCA
LOC_Os04g33960
OsAffx.3987.1.S1_at--802--2251Chr04:20370736..20370883 (25 bp)
AAATCATACTAACCTGGGAGAGAGG
LOC_Os04g33960
OsAffx.3987.1.S1_at--629--891Chr04:20370972..20370996 (25 bp)
AGGCGGCCGGCCTCGTCAGTGGGAG
LOC_Os04g33960
OsAffx.3987.1.S1_at--540--3791Chr04:20370983..20371007 (25 bp)
CTCGTCAGTGGGAGCAGCCACCGTC
LOC_Os04g33960
OsAffx.3987.1.S1_at--994--4751Chr04:20371044..20371068 (25 bp)
GCTGCTCGGCTTGCGGTGCTCGTTA
LOC_Os04g33960
OsAffx.3987.1.S1_at--1113--9091Chr04:20371060..20371084 (25 bp)
TGCTCGTTAGAGGAGTCGGCAAGAT
LOC_Os04g33960
OsAffx.3987.1.S1_at--867--6091Chr04:20371072..20371096 (25 bp)
GAGTCGGCAAGATATGCGGTAGTAT
LOC_Os04g33960
OsAffx.3987.1.S1_at--863--611Chr04:20371085..20371109 (25 bp)
ATGCGGTAGTATTGAGTCAAGGCGA
LOC_Os04g33960
Target Sequence 
AATGATGTGAAATGTCTAACCCCTCATCTGTTCAAAATCATACTAACCTGGGAGAGAGGGGAAGGCAGCCCGACGCCGGT
GGGGGAAGAGGCGGCCGGCGTGGGAATGGGAGGGGGCGGCGGGAGCGGCCGACGGGAGAGGGGGGAGAGGCGGCCGGCCT
CGTCAGTGGGAGCAGCCACCGTCCCACCGGCCATGGCCATCACCGGCGGCGGGAGGGTTGCTGCTCGGCTTGCGGTGCTC
GTTAGAGGAGTCGGCAAGATATGCGGTAGTATTGAGTCAAGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3987.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis