Browse Element(s) Details


OsAffx.25169.1.S1_s_at

Description tigr:9631.m02060
TID=OsAffx.25169.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to dnaJ protein homolog - human
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2073011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20690Os.55478.1.S1_at1/113+11682467..11688504retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g20700Os.6595.1.S1_a_at11/113+11691143..11698420magnesium-chelatase subunit H family protein, expressed
LOC_Os03g20700Os.26986.1.A1_at1/113+11691143..11698420magnesium-chelatase subunit H family protein, expressed
LOC_Os03g20710OsAffx.12955.1.S1_at11/113+11699121..11700180Glycosyl hydrolase family 1 protein
LOC_Os03g20710Os.20617.2.S1_s_at11/113+11699121..11700180Glycosyl hydrolase family 1 protein
LOC_Os03g20720NANA3+11704104..11708699GTPase activating protein, putative, expressed
LOC_Os03g20730OsAffx.25169.1.S1_s_at11/113+11709748..11710398DnaJ domain containing protein, expressed
LOC_Os03g20730Os.26059.1.S1_x_at8/113+11709748..11710398DnaJ domain containing protein, expressed
LOC_Os03g20730Os.26059.1.S1_at2/113+11709748..11710398DnaJ domain containing protein, expressed
LOC_Os03g20740OsAffx.3285.1.S1_at11/113+11717989..11718691expressed protein
LOC_Os03g20750Os.5126.1.S1_at11/113+11721422..11726788mitochondrial import receptor subunit TOM40 homolog, putative, expressed
LOC_Os03g20760Os.55458.1.S1_at10/113+11730705..11732232Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g20770OsAffx.12956.1.S1_at11/113+11733805..11735597hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25169.1.S1_s_at--470--4391Chr03:11710344..11710368 (25 bp)
CCAATCAGATCAAGGCGTGTAGATT
LOC_Os03g20730
OsAffx.25169.1.S1_s_at--319--9711Chr03:11710335..11710359 (25 bp)
TCAAGGCGTGTAGATTTGATTTTGG
LOC_Os03g20730
OsAffx.25169.1.S1_s_at--640--8831Chr03:11710319..11710343 (25 bp)
TGATTTTGGTTTTATTACTCGCAAC
LOC_Os03g20730
OsAffx.25169.1.S1_s_at--5--10251Chr03:11710315..11710339 (25 bp)
TTTGGTTTTATTACTCGCAACCTGC
LOC_Os03g20730
OsAffx.25169.1.S1_s_at--214--8571Chr03:11710313..11710337 (25 bp)
TGGTTTTATTACTCGCAACCTGCAC
LOC_Os03g20730
OsAffx.25169.1.S1_s_at--800--7871Chr03:11710312..11710336 (25 bp)
GGTTTTATTACTCGCAACCTGCACG
LOC_Os03g20730
OsAffx.25169.1.S1_s_at--30--10351Chr03:11710310..11710334 (25 bp)
TTTTATTACTCGCAACCTGCACGTT
LOC_Os03g20730
OsAffx.25169.1.S1_s_at--466--10351Chr03:11710309..11710333 (25 bp)
TTTATTACTCGCAACCTGCACGTTG
LOC_Os03g20730
OsAffx.25169.1.S1_s_at--1062--10691Chr03:11710287..11710311 (25 bp)
TTGCCCTCAGTCACCTGGCGGCGGA
LOC_Os03g20730
OsAffx.25169.1.S1_s_at--55--6411Chr03:11710256..11710280 (25 bp)
GATCGGAGATGAGCTCGGTGTGCGC
LOC_Os03g20730
OsAffx.25169.1.S1_s_at--624--6031Chr03:11710251..11710275 (25 bp)
GAGATGAGCTCGGTGTGCGCGAGGC
LOC_Os03g20730
Target Sequence 
CCAATCAGATCAAGGCGTGTAGATTTGATTTTGGTTTTATTACTCGCAACCTGCACGTTGCCCTCAGTCACCTGGCGGCG
GAGAGAGAGATCGGAGATGAGCTCGGTGTGCGCGAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25169.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis