Browse Element(s) Details


Os.5126.1.S1_at

Description gb:AK105342.1
DB_XREF= gi:32990551
TID=Os.5126.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5126 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-G11, full insert sequence.
FL= gb:AK105342.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2075011/11mitochondrial import receptor subunit TOM40 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20700Os.6595.1.S1_a_at11/113+11691143..11698420magnesium-chelatase subunit H family protein, expressed
LOC_Os03g20700Os.26986.1.A1_at1/113+11691143..11698420magnesium-chelatase subunit H family protein, expressed
LOC_Os03g20710OsAffx.12955.1.S1_at11/113+11699121..11700180Glycosyl hydrolase family 1 protein
LOC_Os03g20710Os.20617.2.S1_s_at11/113+11699121..11700180Glycosyl hydrolase family 1 protein
LOC_Os03g20720NANA3+11704104..11708699GTPase activating protein, putative, expressed
LOC_Os03g20730OsAffx.25169.1.S1_s_at11/113+11709748..11710398DnaJ domain containing protein, expressed
LOC_Os03g20730Os.26059.1.S1_x_at8/113+11709748..11710398DnaJ domain containing protein, expressed
LOC_Os03g20730Os.26059.1.S1_at2/113+11709748..11710398DnaJ domain containing protein, expressed
LOC_Os03g20740OsAffx.3285.1.S1_at11/113+11717989..11718691expressed protein
LOC_Os03g20750Os.5126.1.S1_at11/113+11721422..11726788mitochondrial import receptor subunit TOM40 homolog, putative, expressed
LOC_Os03g20760Os.55458.1.S1_at10/113+11730705..11732232Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g20770OsAffx.12956.1.S1_at11/113+11733805..11735597hypothetical protein
LOC_Os03g20780Os.12691.1.A1_a_at11/113+11748231..11752333ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20780Os.12691.3.S1_x_at11/113+11748231..11752333ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20780Os.12691.1.A1_x_at11/113+11748231..11752333ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006626biological_processprotein targeting to mitochondrion
GO:0006820biological_processanion transport
GO:0005739cellular_componentmitochondrion
GO:0005741cellular_componentmitochondrial outer membrane
GO:0005742cellular_componentmitochondrial outer membrane translocase complex
GO:0005743cellular_componentmitochondrial inner membrane
GO:0008308molecular_functionvoltage-gated ion-selective channel activity
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5126.1.S1_at--496--5651Chr03:11726253..11726277 (25 bp)
GACATGTGGTACTTCTGCGGTTGGC
LOC_Os03g20750
Os.5126.1.S1_at--741--7991Chr03:11726294..11726318 (25 bp)
GGATGTTCACATACTTCAAGCTTCG
LOC_Os03g20750
Os.5126.1.S1_at--36--9411Chr03:11726316..11726340 (25 bp)
TCGTGTTACGAGTGACCAGGTTCTT
LOC_Os03g20750
Os.5126.1.S1_at--69--10091Chr03:11726367..11726391 (25 bp)
TAGGAACGCTGTTGCTACTTTTACA
LOC_Os03g20750
Os.5126.1.S1_at--32--8031Chr03:11726410..11726434 (25 bp)
GGAGGTTGTCTCATTTTGGTTGCTA
LOC_Os03g20750
Os.5126.1.S1_at--1125--5791Chr03:11726551..11726575 (25 bp)
GACGCTCGTCCTTTTTGTGTAATAG
LOC_Os03g20750
Os.5126.1.S1_at--956--3091Chr03:11726571..11726595 (25 bp)
AATAGTAACACCTTGCACGAGCTGC
LOC_Os03g20750
Os.5126.1.S1_at--786--451Chr03:11726616..11726640 (25 bp)
ATCTCATGTTTGATGTCCTCACGCG
LOC_Os03g20750
Os.5126.1.S1_at--1002--2651Chr03:11726662..11726686 (25 bp)
AAGCCATTTGCGGTCTGCTGAACAA
LOC_Os03g20750
Os.5126.1.S1_at--943--9951Chr03:11726695..11726719 (25 bp)
TACCGACTGATGCACCTATTTTTGT
LOC_Os03g20750
Os.5126.1.S1_at--311--9831Chr03:11726763..11726787 (25 bp)
TAAAATTGCGTACCCGCCTTATGTG
LOC_Os03g20750
Target Sequence 
GACATGTGGTACTTCTGCGGTTGGCTGTATGCCCCTTGGAAGGATGTTCACATACTTCAAGCTTCGTGTTACGAGTGACC
AGGTTCTTGCCCTTCTGAGTTGTGAATGGGAATATAGGAACGCTGTTGCTACTTTTACAGTCTTTTTTTGGCGTGATGGA
GGTTGTCTCATTTTGGTTGCTAGATAAAAAGGGCATTAGGGGAGGGTAGTACATGATTCTTTGTTCAATCTTGGATGGAG
CAAGCTGAATAGTGTTAATAATGTTGTACTGTCTGGCAAAATTTTACCCCGAGTGTCCGACGCTCGTCCTTTTTGTGTAA
TAGTAACACCTTGCACGAGCTGCAGAAGATAGCATTTAAAGTCATCTCATGTTTGATGTCCTCACGCGCATCCTATGTTC
ATAAATTGTAAGCCATTTGCGGTCTGCTGAACAAGTTATTGCTACCGACTGATGCACCTATTTTTGTTAGTGTAATATAC
ATTTTTTGTTTGTTAGTGCATAAAAGGTATTAAAATTGCGTACCCGCCTTATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5126.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis