Browse Element(s) Details


OsAffx.12955.1.S1_at

Description tigr:9631.m02058
TID=OsAffx.12955.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=glycosyl hydrolase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2071011/11Glycosyl hydrolase family 1 protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20670Os.22300.1.S1_at11/113+11672438..11675979phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os03g20680OsAffx.12954.1.S1_at11/113+11678111..11679413Late embryogenesis abundant protein, expressed
LOC_Os03g20690Os.55478.1.S1_at1/113+11682467..11688504retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g20700Os.6595.1.S1_a_at11/113+11691143..11698420magnesium-chelatase subunit H family protein, expressed
LOC_Os03g20700Os.26986.1.A1_at1/113+11691143..11698420magnesium-chelatase subunit H family protein, expressed
LOC_Os03g20710OsAffx.12955.1.S1_at11/113+11699121..11700180Glycosyl hydrolase family 1 protein
LOC_Os03g20710Os.20617.2.S1_s_at11/113+11699121..11700180Glycosyl hydrolase family 1 protein
LOC_Os03g20720NANA3+11704104..11708699GTPase activating protein, putative, expressed
LOC_Os03g20730OsAffx.25169.1.S1_s_at11/113+11709748..11710398DnaJ domain containing protein, expressed
LOC_Os03g20730Os.26059.1.S1_x_at8/113+11709748..11710398DnaJ domain containing protein, expressed
LOC_Os03g20730Os.26059.1.S1_at2/113+11709748..11710398DnaJ domain containing protein, expressed
LOC_Os03g20740OsAffx.3285.1.S1_at11/113+11717989..11718691expressed protein
LOC_Os03g20750Os.5126.1.S1_at11/113+11721422..11726788mitochondrial import receptor subunit TOM40 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12955.1.S1_at--948--2271Chr03:11699643..11699667 (25 bp)
AAATGTTACTAATTCGGCAATTCTA
LOC_Os03g20710
OsAffx.12955.1.S1_at--927--5211Chr03:11699615..11699639 (25 bp)
GAATTATCCCTGTTTCTCCTAATAA
LOC_Os03g20710
OsAffx.12955.1.S1_at--1111--6451Chr03:11699543..11699567 (25 bp)
GATCAATGTTATGCTCTTGCAGGAA
LOC_Os03g20710
OsAffx.12955.1.S1_at--195--631Chr03:11699533..11699557 (25 bp)
ATGCTCTTGCAGGAATGGACCAACC
LOC_Os03g20710
OsAffx.12955.1.S1_at--981--8211Chr03:11699507..11699531 (25 bp)
GGCAACTTCAATATCACCCAGGGTG
LOC_Os03g20710
OsAffx.12955.1.S1_at--660--1811Chr03:11699492..11699516 (25 bp)
ACCCAGGGTGAGCATGATACTGCAA
LOC_Os03g20710
OsAffx.12955.1.S1_at--1075--9411Chr03:11699356..11699380 (25 bp)
TCGGGTACACATCCCGTTTCGGTAT
LOC_Os03g20710
OsAffx.12955.1.S1_at--45--6851Chr03:11699341..11699365 (25 bp)
GTTTCGGTATCGTCTATGTGGAGTT
LOC_Os03g20710
OsAffx.12955.1.S1_at--568--8111Chr03:11699276..11699300 (25 bp)
GGACTCAAGCGTTCTGGTTCAAGAA
LOC_Os03g20710
OsAffx.12955.1.S1_at--621--5031Chr03:11699218..11699242 (25 bp)
GCAGACTAATTATCAAAGCCTCAAA
LOC_Os03g20710
OsAffx.12955.1.S1_at--657--3371Chr03:11699187..11699211 (25 bp)
CAGCCTTCCACTGTCAGAATTCAGA
LOC_Os03g20710
Target Sequence 
AAATGTTACTAATTCGGCAATTCTATTAGAATTATCCCTGTTTCTCCTAATAATAATCTTGTTGACAATGAAAAGTAGTA
TTAAACAAGGGTTACTTTATGATCAATGTTATGCTCTTGCAGGAATGGACCAACCTGGCAACTTCAATATCACCCAGGGT
GAGCATGATACTGCAAGAATCAGATATTACAGAGATTACATAACTGAGCTCAAGAAGGTGATAGACGATGGTGCCAAAGT
GATTGGATACTTTGCTTGGTCACTGCTCGACAACTTCGAGTGGAGGCTCGGGTACACATCCCGTTTCGGTATCGTCTATG
TGGAGTTGTGGACTATAGTCTATAAGACGTTAAAGAGTTACCCCCAAGGACTCAAGCGTTCTGGTTCAAGAACATGCTCT
CCAGAAAGAAGAGGAACTAAAGTATGCAGACTAATTATCAAAGCCTCAAAGGCTTCCAGCCTTCCACTGTCAGAATTCAG
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12955.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis