Browse Element(s) Details


OsAffx.3285.1.S1_at

Description tigr:9631.m02061
TID=OsAffx.3285.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2074011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20700Os.6595.1.S1_a_at11/113+11691143..11698420magnesium-chelatase subunit H family protein, expressed
LOC_Os03g20700Os.26986.1.A1_at1/113+11691143..11698420magnesium-chelatase subunit H family protein, expressed
LOC_Os03g20710OsAffx.12955.1.S1_at11/113+11699121..11700180Glycosyl hydrolase family 1 protein
LOC_Os03g20710Os.20617.2.S1_s_at11/113+11699121..11700180Glycosyl hydrolase family 1 protein
LOC_Os03g20720NANA3+11704104..11708699GTPase activating protein, putative, expressed
LOC_Os03g20730OsAffx.25169.1.S1_s_at11/113+11709748..11710398DnaJ domain containing protein, expressed
LOC_Os03g20730Os.26059.1.S1_x_at8/113+11709748..11710398DnaJ domain containing protein, expressed
LOC_Os03g20730Os.26059.1.S1_at2/113+11709748..11710398DnaJ domain containing protein, expressed
LOC_Os03g20740OsAffx.3285.1.S1_at11/113+11717989..11718691expressed protein
LOC_Os03g20750Os.5126.1.S1_at11/113+11721422..11726788mitochondrial import receptor subunit TOM40 homolog, putative, expressed
LOC_Os03g20760Os.55458.1.S1_at10/113+11730705..11732232Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g20770OsAffx.12956.1.S1_at11/113+11733805..11735597hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3285.1.S1_at--344--1251Chr03:11718635..11718659 (25 bp)
AGTTGGCGGCTGGTTGCGGCGACAA
LOC_Os03g20740
OsAffx.3285.1.S1_at--261--4111Chr03:11718616..11718640 (25 bp)
CGACAACTGCGGAGGTGGTTGCATC
LOC_Os03g20740
OsAffx.3285.1.S1_at--168--3272Chr12:7200467..7200486 (20 bp)
CAACTGCGGAGGTGGTTGCATCAGA
NONE
OsAffx.3285.1.S1_at--446--7511Chr03:11718558..11718582 (25 bp)
GTGGATGCGAGGTTGGCGGCTTGTC
LOC_Os03g20740
OsAffx.3285.1.S1_at--639--8291Chr03:11718541..11718565 (25 bp)
GGCTTGTCGCGGTTGCGGCAGAGTT
LOC_Os03g20740
OsAffx.3285.1.S1_at--783--1932Chr03:11718512..11718536 (25 bp)
ACGGAAGCGCCAGGACGCCGGTGGT
LOC_Os03g20740
OsAffx.3285.1.S1_at--914--2151Chr03:11718109..11718133 (25 bp)
ACAGCGCGTCGATGGGGATCACTAC
LOC_Os03g20740
OsAffx.3285.1.S1_at--1145--7951Chr03:11718094..11718118 (25 bp)
GGATCACTACACTTGGCGGCGCGTA
LOC_Os03g20740
OsAffx.3285.1.S1_at--338--391Chr03:11718092..11718116 (25 bp)
ATCACTACACTTGGCGGCGCGTAGA
LOC_Os03g20740
OsAffx.3285.1.S1_at--146--2072Chr06:937756..937776 (21 bp)
ACTTGGGCGGCTGGCCTTCCATCGA
NONE
OsAffx.3285.1.S1_at--1081--8331Chr03:11718027..11718051 (25 bp)
GGCTGGCCTTCCATCGAGTCGTCGC
LOC_Os03g20740
Target Sequence 
AGTTGGCGGCTGGTTGCGGCGACAACTGCGGAGGTGGTTGCATCAGAGATGGGGCCGGAAGCACCAGGACGCCGGCGGTG
GATGCGAGGTTGGCGGCTTGTCGCGGTTGCGGCAGAGTTGGGGACGGAAGCGCCAGGACGCCGGTGGTGGAGGCAAGTCG
GCCGGCCACGGCGATGGGGAGCCCGGCGACTGGCAGCGGCCGAGCGTCGATGGGGATCCCGGCGACCGGCCGCCGCCGCG
CATCGACGGGGATGCTGGGGACCGGCCGCGCCCGCGCGTCGATGGGGATCCCAGCGACCGGCCGCCGCCGCGCGTGGATG
GGGAGCCCTGCGCTCGGCCACGCGTCGATGGGGAGCCCGGCGACCGGCCGCCGCCGCGCATCGATGGAGAGCCCGGCGAC
CTGCCGCCACAGCGCGTCGATGGGGATCACTACACTTGGCGGCGCGTAGATGGGGAGCTAGGTGGCCGGCGGCGCGTCGG
GGACTTGGGCGGCTGGCCTTCCATCGAGTCGTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3285.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis