Browse Element(s) Details


Os.24684.1.S1_at

Description gb:AK067222.1
DB_XREF= gi:32977240
TID=Os.24684.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24684 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013099A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013099A05, full insert sequence.
FL= gb:AK067222.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2064010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20560Os.23243.2.S1_at11/113+11631798..11632749lipoate-protein ligase, putative, expressed
LOC_Os03g20570Os.23243.1.A1_a_at11/113+11632832..11635444Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os03g20570OsAffx.28912.2.S1_at6/113+11632832..11635444Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os03g20580OsAffx.3283.1.S1_at11/113+11639233..11643090expressed protein
LOC_Os03g20580Os.57428.1.S1_x_at11/113+11639233..11643090expressed protein
LOC_Os03g20590OsAffx.25167.1.S1_at11/113+11645158..11646130hypothetical protein
LOC_Os03g20590OsAffx.6152.1.A1_at1/113+11645158..11646130hypothetical protein
LOC_Os03g20600Os.51506.1.S1_at11/113+11646358..11646954expressed protein
LOC_Os03g20610OsAffx.12952.1.S1_at11/113+11649114..11649392hypothetical protein
LOC_Os03g20620OsAffx.25168.2.S1_s_at11/113+11650429..11650889hypothetical protein
LOC_Os03g20620OsAffx.25168.2.S1_x_at11/113+11650429..11650889hypothetical protein
LOC_Os03g20620OsAffx.25168.1.S1_at2/113+11650429..11650889hypothetical protein
LOC_Os03g20630OsAffx.12953.1.S1_at11/113+11651613..1165631314 kDa zinc-binding protein, putative, expressed
LOC_Os03g20630Os.10655.1.S1_at11/113+11651613..1165631314 kDa zinc-binding protein, putative, expressed
LOC_Os03g20630Os.57481.1.S1_x_at8/113+11651613..1165631314 kDa zinc-binding protein, putative, expressed
LOC_Os03g20640Os.24684.1.S1_at10/113+11656723..11658993expressed protein
LOC_Os03g20650NANA3+11662277..11663168bZIP transcription factor family protein, expressed
LOC_Os03g20660Os.47130.4.A1_x_at3/113+11665786..11666109retrotransposon protein, putative, unclassified
LOC_Os03g20670Os.22300.1.S1_at11/113+11672438..11675979phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os03g20680OsAffx.12954.1.S1_at11/113+11678111..11679413Late embryogenesis abundant protein, expressed
LOC_Os03g20690Os.55478.1.S1_at1/113+11682467..11688504retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24684.1.S1_at--1064--6811Chr03:11657735..11657759 (25 bp)
GTTTATACTGTCTCCTAGTCTTTTC
LOC_Os03g20640
Os.24684.1.S1_at--869--1151NONE
AGTCTTTTCTCTGGAGGCTGCTGTC
NONE
Os.24684.1.S1_at--377--8331Chr03:11658012..11658036 (25 bp)
GGCTGCTGTCAGTTATGCTTTTGGA
LOC_Os03g20640
Os.24684.1.S1_at--1005--8031Chr03:11658034..11658220 (25 bp)
GGAGTTGCTTTCAGTTGCTTGTATC
LOC_Os03g20640
Os.24684.1.S1_at--383--8771Chr03:11658215..11658239 (25 bp)
TGTATCTTCAACTTCTCTATCGGCA
LOC_Os03g20640
Os.24684.1.S1_at--415--191Chr03:11658443..11658467 (25 bp)
ATTTCAGTAGCTCTTTCGTCTCCAA
LOC_Os03g20640
Os.24684.1.S1_at--407--3211Chr03:11658465..11658489 (25 bp)
CAAGGCTTGTGATACCCGCTATATT
LOC_Os03g20640
Os.24684.1.S1_at--757--1791Chr03:11658478..11658502 (25 bp)
ACCCGCTATATTTTTTGGATTGTCA
LOC_Os03g20640
Os.24684.1.S1_at--712--8571Chr03:11658493..11658517 (25 bp)
TGGATTGTCAACCTTGTCAGATCAC
LOC_Os03g20640
Os.24684.1.S1_at--907--6251Chr03:11658744..11658768 (25 bp)
GATGGGTTTCTTTGCATACAAGGCT
LOC_Os03g20640
Os.24684.1.S1_at--772--2931Chr03:11658763..11658787 (25 bp)
AAGGCTGCCGCTTTGGTACAAGTCT
LOC_Os03g20640
Target Sequence 
GTTTATACTGTCTCCTAGTCTTTTCTCTGGAGGCTGCTGTCAGTTATGCTTTTGGAGTTGCTTTCAGTTGCTTGTATCTT
CAACTTCTCTATCGGCACACAGATAATTTGTCAAAGAAAGATGTTCCAGAAATTTTTATGAAGAAGAAAGTGAAAAGAAT
CGGCATAAGAAGCGAGGATTTGAAGAATACAATANAGAAGGTGTTGGGTGGTATTTCAGTAGCTCTTTCGTCTCCAAGGC
TTGTGATACCCGCTATATTTTTTGGATTGTCAACCTTGTCAGATCACTTTCAAAATAGCATTTTNAATTNTGAGCTTGTT
CCAGGAATGATGGGTTTCTTTGCATACAAGGCTGCCGCTTTGGTACAAGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24684.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis