Browse Element(s) Details


Os.51506.1.S1_at

Description gb:AK062978.1
DB_XREF= gi:32972996
TID=Os.51506.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51506 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-E12, full insert sequence.
FL= gb:AK062978.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2060011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20550Os.33131.1.A1_at11/113+11629657..11630977WRKY DNA binding domain containing protein, expressed
LOC_Os03g20560Os.23243.2.S1_at11/113+11631798..11632749lipoate-protein ligase, putative, expressed
LOC_Os03g20570Os.23243.1.A1_a_at11/113+11632832..11635444Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os03g20570OsAffx.28912.2.S1_at6/113+11632832..11635444Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os03g20580OsAffx.3283.1.S1_at11/113+11639233..11643090expressed protein
LOC_Os03g20580Os.57428.1.S1_x_at11/113+11639233..11643090expressed protein
LOC_Os03g20590OsAffx.25167.1.S1_at11/113+11645158..11646130hypothetical protein
LOC_Os03g20590OsAffx.6152.1.A1_at1/113+11645158..11646130hypothetical protein
LOC_Os03g20600Os.51506.1.S1_at11/113+11646358..11646954expressed protein
LOC_Os03g20610OsAffx.12952.1.S1_at11/113+11649114..11649392hypothetical protein
LOC_Os03g20620OsAffx.25168.2.S1_s_at11/113+11650429..11650889hypothetical protein
LOC_Os03g20620OsAffx.25168.2.S1_x_at11/113+11650429..11650889hypothetical protein
LOC_Os03g20620OsAffx.25168.1.S1_at2/113+11650429..11650889hypothetical protein
LOC_Os03g20630OsAffx.12953.1.S1_at11/113+11651613..1165631314 kDa zinc-binding protein, putative, expressed
LOC_Os03g20630Os.10655.1.S1_at11/113+11651613..1165631314 kDa zinc-binding protein, putative, expressed
LOC_Os03g20630Os.57481.1.S1_x_at8/113+11651613..1165631314 kDa zinc-binding protein, putative, expressed
LOC_Os03g20640Os.24684.1.S1_at10/113+11656723..11658993expressed protein
LOC_Os03g20650NANA3+11662277..11663168bZIP transcription factor family protein, expressed
LOC_Os03g20660Os.47130.4.A1_x_at3/113+11665786..11666109retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51506.1.S1_at--280--1751Chr03:11646900..11646924 (25 bp)
ACCTTTGATCCGCAGCGATGAACGG
LOC_Os03g20600
Os.51506.1.S1_at--679--7771Chr03:11646786..11646810 (25 bp)
GGTGCATCAGGAAGTCGTGGTCCAA
LOC_Os03g20600
Os.51506.1.S1_at--420--8191Chr03:11646777..11646801 (25 bp)
GGAAGTCGTGGTCCAACGACTCGCT
LOC_Os03g20600
Os.51506.1.S1_at--872--7491Chr03:11646770..11646794 (25 bp)
GTGGTCCAACGACTCGCTCTCGAGC
LOC_Os03g20600
Os.51506.1.S1_at--594--6131Chr03:11646540..11646564 (25 bp)
GAGGGCGACCATGGTTTGATCGATC
LOC_Os03g20600
Os.51506.1.S1_at--307--1731Chr03:11646533..11646557 (25 bp)
ACCATGGTTTGATCGATCTGTCGCA
LOC_Os03g20600
Os.51506.1.S1_at--36--10791Chr03:11646525..11646549 (25 bp)
TTGATCGATCTGTCGCACTTGTGCG
LOC_Os03g20600
Os.51506.1.S1_at--868--9351Chr03:11646513..11646537 (25 bp)
TCGCACTTGTGCGTGTTTAATAAAT
LOC_Os03g20600
Os.51506.1.S1_at--1102--9311Chr03:11646422..11646446 (25 bp)
TCGTACGAGGGTGCTTTTTTCTTCT
LOC_Os03g20600
Os.51506.1.S1_at--143--6151Chr03:11646416..11646440 (25 bp)
GAGGGTGCTTTTTTCTTCTTGAAAT
LOC_Os03g20600
Os.51506.1.S1_at--134--411Chr03:11646393..11646417 (25 bp)
ATCATGTAAAATAAACTTGCGTGTA
LOC_Os03g20600
Target Sequence 
ACCTTTGATCCGCAGCGATGAACGGGGGAAGCCCGGTGATGACGGAGAGAGAGCGGCGCGCGTACCGGTACGGGCAGGCG
TCGTCGCCGACGGCGCGGGCGGTCGGGCAGCTGGGGTGCATCAGGAAGTCGTGGTCCAACGACTCGCTCTCGAGCTACGG
CGGCGGCGGGAGGGCCGGCGGCGGCGGCGCCCAGGCGTGCGTGTGCGCGCCCACCACGCACCCGGGCTCCTTCCGGTGCA
AGCACCACCGCCAAAACGCCTCCAACCTCGGCGCCGCCGCCGCGGCGCCGGCCCAGGTGGTCGACGTTGACGCGGACGCC
AAGCACCAGGAGGCCCAGGAGCAGGAGGAGAAGGCGACGTGAGGGCGACCATGGTTTGATCGATCTGTCGCACTTGTGCG
TGTTTAATAAATTTCATAGTTGTACGAACAAAAGTGTGGGAAATTTTTGTTTCCTCTCTCTATATAGNTTCGAGATTTTC
GTACGAGGGTGCTTTTTTCTTCTTGAAATCATGTAAAATAAACTTGCGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51506.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis