Browse Element(s) Details


Os.10805.1.S1_at

Description gb:AK059138.1
DB_XREF= gi:32969156
TID=Os.10805.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10805 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-022-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-H09, full insert sequence.
FL= gb:AK059138.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2052011/11Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20460Os.54617.1.S1_at11/113+11574287..11577890Guanylate kinase family protein, expressed
LOC_Os03g20470Os.20198.1.S1_at11/113+11578668..11581709Membrane steroid binding protein 1, putative, expressed
LOC_Os03g20470Os.54649.1.S1_at1/113+11578668..11581709Membrane steroid binding protein 1, putative, expressed
LOC_Os03g20480Os.11156.1.S1_at11/113+11582077..11582711expressed protein
LOC_Os03g20490NANA3+11582947..11587267retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g20500Os.5812.1.S1_at11/113+11592064..11593574F-box domain containing protein, expressed
LOC_Os03g20520Os.10805.1.S1_at11/113+11600755..11606684Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os03g20530Os.38006.1.S1_at11/113+11608207..11614392expressed protein
LOC_Os03g20540OsAffx.12951.1.S1_at11/113+11620533..11620897hypothetical protein
LOC_Os03g20550Os.33131.1.A1_at11/113+11629657..11630977WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005489molecular_functionelectron transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10805.1.S1_at--447--11Chr03:11601890..11601914 (25 bp)
AGGTTGTTCCCACAATCTATACCGA
LOC_Os03g20520
Os.10805.1.S1_at--642--1451Chr03:11601735..11601759 (25 bp)
AGAAGCAATTGGCTATCCCAGGCCT
LOC_Os03g20520
Os.10805.1.S1_at--887--9291Chr03:11601711..11601735 (25 bp)
TCCGCCTGGTGTATATTTCTTCTAT
LOC_Os03g20520
Os.10805.1.S1_at--804--5511Chr03:11601260..11601284 (25 bp)
GAAAATACATCGCTTCTTCACTTCC
LOC_Os03g20520
Os.10805.1.S1_at--176--8031Chr03:11601096..11601118 (23 bp)
GGAGGGATTTTCACTGTTGCTGGCA
LOC_Os03g20520
Os.10805.1.S1_at--120--6691Chr03:11601081..11601105 (25 bp)
GTTGCTGGCATCATAGATTCTTTTG
LOC_Os03g20520
Os.10805.1.S1_at--381--7151Chr03:11601057..11601081 (25 bp)
GTCTACCATGGTCATCGTGCTATAA
LOC_Os03g20520
Os.10805.1.S1_at--1052--10751Chr03:11600960..11600984 (25 bp)
TTGAGTCGACTAATGCTTGCCTGAG
LOC_Os03g20520
Os.10805.1.S1_at--451--9751Chr03:11600891..11600915 (25 bp)
TAATACATTTTCTAGCCGCTCAGAC
LOC_Os03g20520
Os.10805.1.S1_at--703--1671Chr03:11600878..11600902 (25 bp)
AGCCGCTCAGACTTTTGCTGATTAT
LOC_Os03g20520
Os.10805.1.S1_at--613--6891Chr03:11600828..11600852 (25 bp)
GTATAAGCTGTTGCATCGTCGTATT
LOC_Os03g20520
Target Sequence 
AGGTTGTTCCCACAATCTATACCGACATTAGAGGACGGAAAATCAACTCAAATCAGTTTTCTGTGACGGAGCACTTTAGA
GAAGCAATTGGCTATCCCAGGCCTCCGCCTGGTGTATATTTCTTCTATGAATTTTCTCCAATTAAGGTTGATTTTACTGA
AGAAAATACATCGCTTCTTCACTTCCTGACAAACATATGTGCTATTGTTGGAGGGATTTTCACTGTTGCTGGCATCATAG
ATTCTTTTGTCTACCATGGTCATCGTGCTATAAAGAAAAAGATGGAGATCGGAAAACTTGGNATAATTCCATATTTAGCA
TATACCCTGTAGGATCATAGTTTGAATTGAGTCGACTAATGCTTGCCTGAGAAAGGTACGAAGTAAATTCAGGAGGAATT
TTGGCTAATATGTTGTAATACATTTTCTAGCCGCTCAGACTTTTGCTGATTATTCAAGCCTAGAGCATAGACATGTTTGT
ATAAGCTGTTGCATCGTCGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10805.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis