Browse Element(s) Details


Os.11156.1.S1_at

Description gb:AK108260.1
DB_XREF= gi:32993469
TID=Os.11156.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11156 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-141-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-B02, full insert sequence.
FL= gb:AK108260.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2048011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20450Os.49215.1.S1_at11/113+11564133..11568807Leucine Rich Repeat family protein, expressed
LOC_Os03g20450Os.49215.1.S2_at6/113+11564133..11568807Leucine Rich Repeat family protein, expressed
LOC_Os03g20460Os.54617.1.S1_at11/113+11574287..11577890Guanylate kinase family protein, expressed
LOC_Os03g20470Os.20198.1.S1_at11/113+11578668..11581709Membrane steroid binding protein 1, putative, expressed
LOC_Os03g20470Os.54649.1.S1_at1/113+11578668..11581709Membrane steroid binding protein 1, putative, expressed
LOC_Os03g20480Os.11156.1.S1_at11/113+11582077..11582711expressed protein
LOC_Os03g20490NANA3+11582947..11587267retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g20500Os.5812.1.S1_at11/113+11592064..11593574F-box domain containing protein, expressed
LOC_Os03g20520Os.10805.1.S1_at11/113+11600755..11606684Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11156.1.S1_at--593--5071Chr03:11582133..11582157 (25 bp)
GCAGCGGCCGCCAATAATTGTCGGA
LOC_Os03g20480
Os.11156.1.S1_at--931--9731Chr03:11582147..11582171 (25 bp)
TAATTGTCGGAGCAAAGGGCTAGCC
LOC_Os03g20480
Os.11156.1.S1_at--140--1671Chr03:11582312..11582336 (25 bp)
AGCCGCGCCGTGTCATGTGGAAACA
LOC_Os03g20480
Os.11156.1.S1_at--158--7531Chr03:11582328..11582352 (25 bp)
GTGGAAACAGCGAGCGGCCACAACC
LOC_Os03g20480
Os.11156.1.S1_at--2--1351Chr03:11582450..11582474 (25 bp)
AGAGTGTGTGACTCTGCACAGGACA
LOC_Os03g20480
Os.11156.1.S1_at--237--9031Chr03:11582464..11582488 (25 bp)
TGCACAGGACAGGATGGCCACCCTG
LOC_Os03g20480
Os.11156.1.S1_at--810--4391Chr03:11582488..11582512 (25 bp)
GCCAACCGTGTACTTGCTCTGGATA
LOC_Os03g20480
Os.11156.1.S1_at--885--9451Chr03:11582505..11582529 (25 bp)
TCTGGATATTTCTGGCTCCTCCGTC
LOC_Os03g20480
Os.11156.1.S1_at--9--2251Chr03:11582574..11582598 (25 bp)
AAATTGTGTGACGACCAGGCCACCA
LOC_Os03g20480
Os.11156.1.S1_at--656--1071Chr03:11582598..11582622 (25 bp)
AGGGACCTGGTTTTCAGTTGCTGCT
LOC_Os03g20480
Os.11156.1.S1_at--17--6291Chr03:11582671..11582695 (25 bp)
GATGTATTTTATAAACCCTCTCCTT
LOC_Os03g20480
Target Sequence 
GCAGCGGCCGCCAATAATTGTCGGAGCAAAGGGCTAGCCGGGAGGCGCNGCACACCTCGTCACATGGCGTGTCCCCGAGC
AGAGATGAGAGATGGTGAGGATGAGATGGCCCCCCGCGTCGTCTCCTCTACCGGCGCGCGCCCGCGNNNNNCNACGCAGG
TAGCGCCATCCACATTCCTCGAGCCGCGCCGTGTCATGTGGAAACAGCGAGCGGCCACAACCCACCTCGTCGTGCTCCTC
CTCCCGGTTTGGTTTCGTTTGGTTTGGTTTGTTTTCCTCTCCTCCGCTCGGACGCCGATCCGTCCCCGTGGCTCGCGGCA
GAGTGTGTGACTCTGCACAGGACAGGATGGCCACCCTGCCAACCGTGTACTTGCTCTGGATATTTCTGGCTCCTCCGTCN
TCCCGGAGCTCTCTCTCTCTCTCGNCTGCCTGTAGCTGTACTCCAAATTGTGTGACGACCAGGCCACCAGGGACCTGGTT
TTCAGTTGCTGCTAATATAACAAAATATCANGTGGTAGGCTGGTGGATATAATTGCAGGGAGATGTATTTTATAAACCCT
CTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11156.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis