Browse Element(s) Details


Os.5812.1.S1_at

Description gb:AK071172.1
DB_XREF= gi:32981195
TID=Os.5812.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5812 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023081A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023081A12, full insert sequence.
FL= gb:AK071172.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2050011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20450Os.49215.1.S1_at11/113+11564133..11568807Leucine Rich Repeat family protein, expressed
LOC_Os03g20450Os.49215.1.S2_at6/113+11564133..11568807Leucine Rich Repeat family protein, expressed
LOC_Os03g20460Os.54617.1.S1_at11/113+11574287..11577890Guanylate kinase family protein, expressed
LOC_Os03g20470Os.20198.1.S1_at11/113+11578668..11581709Membrane steroid binding protein 1, putative, expressed
LOC_Os03g20470Os.54649.1.S1_at1/113+11578668..11581709Membrane steroid binding protein 1, putative, expressed
LOC_Os03g20480Os.11156.1.S1_at11/113+11582077..11582711expressed protein
LOC_Os03g20490NANA3+11582947..11587267retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g20500Os.5812.1.S1_at11/113+11592064..11593574F-box domain containing protein, expressed
LOC_Os03g20520Os.10805.1.S1_at11/113+11600755..11606684Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os03g20530Os.38006.1.S1_at11/113+11608207..11614392expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5812.1.S1_at--1072--9011Chr03:11593076..11593100 (25 bp)
TGCAACATGAAGCTCCGGTACGCGC
LOC_Os03g20500
Os.5812.1.S1_at--1068--3711Chr03:11593276..11593300 (25 bp)
CTACCTGCTAGAGATGAACGGCTTC
LOC_Os03g20500
Os.5812.1.S1_at--198--10771Chr03:11593314..11593338 (25 bp)
TTGAGAACTTGAGATCGCCACCCAC
LOC_Os03g20500
Os.5812.1.S1_at--1124--6431Chr03:11593384..11593408 (25 bp)
GATCAGCTATTCAGCTCAGCTCGAT
LOC_Os03g20500
Os.5812.1.S1_at--128--4051Chr03:11593405..11593429 (25 bp)
CGATTCAGTGGCACACCGAGGTGTT
LOC_Os03g20500
Os.5812.1.S1_at--370--4071Chr03:11593421..11593445 (25 bp)
CGAGGTGTTCGTCCATGTTGTAACA
LOC_Os03g20500
Os.5812.1.S1_at--361--10811Chr03:11593438..11593462 (25 bp)
TTGTAACAGCGATCGTGTGTCTCCT
LOC_Os03g20500
Os.5812.1.S1_at--1091--9331Chr03:11593462..11593486 (25 bp)
TCGACTTTTCGATACTGCCTTAGCA
LOC_Os03g20500
Os.5812.1.S1_at--487--3631Chr03:11593480..11593504 (25 bp)
CTTAGCATCATCCTCGCAACAAATA
LOC_Os03g20500
Os.5812.1.S1_at--426--8211Chr03:11593521..11593545 (25 bp)
GGAATGCTTCACTTGGTTCTGTCCA
LOC_Os03g20500
Os.5812.1.S1_at--26--7911Chr03:11593535..11593559 (25 bp)
GGTTCTGTCCATTTCATGAATCGAC
LOC_Os03g20500
Target Sequence 
TGCAACATGAAGCTCCGGTACGCGCCGATGCTCGAGCTCTCCGACGGCACGCGGATCCAGGGCGCCACGCTCGTCGTCAT
CAAGCCCGTCGGCGAGGCCGGCGGAATCGGCGGCGGCAGGAAGGAGCTCGACGAGTTCGTCGCCGACGCATTCGACGGCC
CGTACAGGGAGGCCGTCAGCGCGCTCAGCAAGCGCCGCACCTACCTGCTAGAGATGAACGGCTTCTGAGAGCGTAGAGTT
GAGAACTTGAGATCGCCACCCACCACCATGGCCCGTGCAGAGATCGCTCTGCTCTCTTCGCTTCAGCTGATCAGCTATTC
AGCTCAGCTCGATTCAGTGGCACACCGAGGTGTTCGTCCATGTTGTAACAGCGATCGTGTGTCTCCTCGACTTTTCGATA
CTGCCTTAGCATCATCCTCGCAACAAATAATGGAATTAGAAATTTGGAATGCTTCACTTGGTTCTGTCCATTTCATGAAT
CGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5812.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis